Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5128 | 5' | -57.2 | NC_001798.1 | + | 1 | 0.68 | 0.807181 |
Target: 5'- CCCGCCccGCCucuuuUCCCCCGGG-GAg--- -3' miRNA: 3'- GGGUGG--UGGu----AGGGGGCUCuCUacug -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 320 | 0.68 | 0.789513 |
Target: 5'- aCCACCGCUcgCCCUCGcAGAccaGACa -3' miRNA: 3'- gGGUGGUGGuaGGGGGC-UCUcuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 382 | 0.68 | 0.784102 |
Target: 5'- cCCCGCCACCcccucccuccccuccAUCCCgCCGAGcucgcGGCa -3' miRNA: 3'- -GGGUGGUGG---------------UAGGG-GGCUCucua-CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 2163 | 0.67 | 0.824236 |
Target: 5'- aCCACgCGCaCGUCCUCCGGGucg-GGCa -3' miRNA: 3'- gGGUG-GUG-GUAGGGGGCUCucuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 3547 | 0.66 | 0.863793 |
Target: 5'- gCCCGCCGCCAUggcguaCCCCaGGuGG-GGCa -3' miRNA: 3'- -GGGUGGUGGUAg-----GGGGcUCuCUaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 3865 | 0.67 | 0.848533 |
Target: 5'- gCCCAgcCCGCCGUacagcacgcgCCCCGGGGGcgGGg -3' miRNA: 3'- -GGGU--GGUGGUAg---------GGGGCUCUCuaCUg -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 7062 | 0.71 | 0.604046 |
Target: 5'- gCCCACCcCCAaaCCCCGguuGGGGcgGGCa -3' miRNA: 3'- -GGGUGGuGGUagGGGGC---UCUCuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 7777 | 0.67 | 0.81579 |
Target: 5'- aCCCAcgacCCACCG-CCCCCGcuggcgggagccAGGGucgGACa -3' miRNA: 3'- -GGGU----GGUGGUaGGGGGC------------UCUCua-CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 9029 | 0.72 | 0.588013 |
Target: 5'- aCCCACCGCC--CCCCgcagccagcgcacggCGAGccAGGUGACg -3' miRNA: 3'- -GGGUGGUGGuaGGGG---------------GCUC--UCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 9636 | 0.66 | 0.863793 |
Target: 5'- cCCCAgCACCG--CCCCGAGgcgcAGcgGGCc -3' miRNA: 3'- -GGGUgGUGGUagGGGGCUC----UCuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 11065 | 0.69 | 0.723803 |
Target: 5'- aCCCGCCucCCAUgCCaUCCGGGGaAUGACg -3' miRNA: 3'- -GGGUGGu-GGUA-GG-GGGCUCUcUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 14741 | 0.66 | 0.882417 |
Target: 5'- cCCCACCcCCA-CCCCCuaaucccgcucGGGUGGCa -3' miRNA: 3'- -GGGUGGuGGUaGGGGGcuc--------UCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 21790 | 0.67 | 0.81579 |
Target: 5'- gCCCGCCccccguccggGCCcgCCucggggcggagCCCGcGGGAUGACg -3' miRNA: 3'- -GGGUGG----------UGGuaGG-----------GGGCuCUCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 21934 | 0.66 | 0.871122 |
Target: 5'- aCCCugCGgcCCcgCCCCCuuugggcgGAGcgcgGGAUGACg -3' miRNA: 3'- -GGGugGU--GGuaGGGGG--------CUC----UCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 22630 | 0.67 | 0.832514 |
Target: 5'- cCCCACUGCCG-CCCCUGA-AGAaGAa -3' miRNA: 3'- -GGGUGGUGGUaGGGGGCUcUCUaCUg -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 22872 | 0.68 | 0.780468 |
Target: 5'- cCCCGCCGCgCGg--CCCGGGuucGGGUGGCa -3' miRNA: 3'- -GGGUGGUG-GUaggGGGCUC---UCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 23817 | 0.66 | 0.884473 |
Target: 5'- gCCgGCCcCCcgCCCCCGGGgcgcgugcuguacGGcgGGCu -3' miRNA: 3'- -GGgUGGuGGuaGGGGGCUC-------------UCuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 27668 | 0.73 | 0.505711 |
Target: 5'- cCCCAaaaaaCACCc-CCCCCGGGGGuUGACu -3' miRNA: 3'- -GGGUg----GUGGuaGGGGGCUCUCuACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 27913 | 0.7 | 0.64429 |
Target: 5'- uCCCGCCGCCGgggUCCCCGccgccGGGGUcccGGCg -3' miRNA: 3'- -GGGUGGUGGUa--GGGGGCu----CUCUA---CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 28236 | 0.66 | 0.87613 |
Target: 5'- gCCGCCGCCugcCCCCCGccgccgccgcgcaaGGAGcgcgGGCc -3' miRNA: 3'- gGGUGGUGGua-GGGGGC--------------UCUCua--CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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