miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5128 5' -57.2 NC_001798.1 + 1 0.68 0.807181
Target:  5'- CCCGCCccGCCucuuuUCCCCCGGG-GAg--- -3'
miRNA:   3'- GGGUGG--UGGu----AGGGGGCUCuCUacug -5'
5128 5' -57.2 NC_001798.1 + 320 0.68 0.789513
Target:  5'- aCCACCGCUcgCCCUCGcAGAccaGACa -3'
miRNA:   3'- gGGUGGUGGuaGGGGGC-UCUcuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 382 0.68 0.784102
Target:  5'- cCCCGCCACCcccucccuccccuccAUCCCgCCGAGcucgcGGCa -3'
miRNA:   3'- -GGGUGGUGG---------------UAGGG-GGCUCucua-CUG- -5'
5128 5' -57.2 NC_001798.1 + 2163 0.67 0.824236
Target:  5'- aCCACgCGCaCGUCCUCCGGGucg-GGCa -3'
miRNA:   3'- gGGUG-GUG-GUAGGGGGCUCucuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 3547 0.66 0.863793
Target:  5'- gCCCGCCGCCAUggcguaCCCCaGGuGG-GGCa -3'
miRNA:   3'- -GGGUGGUGGUAg-----GGGGcUCuCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 3865 0.67 0.848533
Target:  5'- gCCCAgcCCGCCGUacagcacgcgCCCCGGGGGcgGGg -3'
miRNA:   3'- -GGGU--GGUGGUAg---------GGGGCUCUCuaCUg -5'
5128 5' -57.2 NC_001798.1 + 7062 0.71 0.604046
Target:  5'- gCCCACCcCCAaaCCCCGguuGGGGcgGGCa -3'
miRNA:   3'- -GGGUGGuGGUagGGGGC---UCUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 7777 0.67 0.81579
Target:  5'- aCCCAcgacCCACCG-CCCCCGcuggcgggagccAGGGucgGACa -3'
miRNA:   3'- -GGGU----GGUGGUaGGGGGC------------UCUCua-CUG- -5'
5128 5' -57.2 NC_001798.1 + 9029 0.72 0.588013
Target:  5'- aCCCACCGCC--CCCCgcagccagcgcacggCGAGccAGGUGACg -3'
miRNA:   3'- -GGGUGGUGGuaGGGG---------------GCUC--UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 9636 0.66 0.863793
Target:  5'- cCCCAgCACCG--CCCCGAGgcgcAGcgGGCc -3'
miRNA:   3'- -GGGUgGUGGUagGGGGCUC----UCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 11065 0.69 0.723803
Target:  5'- aCCCGCCucCCAUgCCaUCCGGGGaAUGACg -3'
miRNA:   3'- -GGGUGGu-GGUA-GG-GGGCUCUcUACUG- -5'
5128 5' -57.2 NC_001798.1 + 14741 0.66 0.882417
Target:  5'- cCCCACCcCCA-CCCCCuaaucccgcucGGGUGGCa -3'
miRNA:   3'- -GGGUGGuGGUaGGGGGcuc--------UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 21790 0.67 0.81579
Target:  5'- gCCCGCCccccguccggGCCcgCCucggggcggagCCCGcGGGAUGACg -3'
miRNA:   3'- -GGGUGG----------UGGuaGG-----------GGGCuCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 21934 0.66 0.871122
Target:  5'- aCCCugCGgcCCcgCCCCCuuugggcgGAGcgcgGGAUGACg -3'
miRNA:   3'- -GGGugGU--GGuaGGGGG--------CUC----UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 22630 0.67 0.832514
Target:  5'- cCCCACUGCCG-CCCCUGA-AGAaGAa -3'
miRNA:   3'- -GGGUGGUGGUaGGGGGCUcUCUaCUg -5'
5128 5' -57.2 NC_001798.1 + 22872 0.68 0.780468
Target:  5'- cCCCGCCGCgCGg--CCCGGGuucGGGUGGCa -3'
miRNA:   3'- -GGGUGGUG-GUaggGGGCUC---UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 23817 0.66 0.884473
Target:  5'- gCCgGCCcCCcgCCCCCGGGgcgcgugcuguacGGcgGGCu -3'
miRNA:   3'- -GGgUGGuGGuaGGGGGCUC-------------UCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 27668 0.73 0.505711
Target:  5'- cCCCAaaaaaCACCc-CCCCCGGGGGuUGACu -3'
miRNA:   3'- -GGGUg----GUGGuaGGGGGCUCUCuACUG- -5'
5128 5' -57.2 NC_001798.1 + 27913 0.7 0.64429
Target:  5'- uCCCGCCGCCGgggUCCCCGccgccGGGGUcccGGCg -3'
miRNA:   3'- -GGGUGGUGGUa--GGGGGCu----CUCUA---CUG- -5'
5128 5' -57.2 NC_001798.1 + 28236 0.66 0.87613
Target:  5'- gCCGCCGCCugcCCCCCGccgccgccgcgcaaGGAGcgcgGGCc -3'
miRNA:   3'- gGGUGGUGGua-GGGGGC--------------UCUCua--CUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.