miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5128 5' -57.2 NC_001798.1 + 66000 0.66 0.870399
Target:  5'- uCCCACCACgA-CCCCUGucgccccAGGGcgauGUGGCg -3'
miRNA:   3'- -GGGUGGUGgUaGGGGGC-------UCUC----UACUG- -5'
5128 5' -57.2 NC_001798.1 + 93764 0.66 0.868945
Target:  5'- gCCCGCCACCccaaguucgcgagcgCCgCCCGGGGGGccauUGGg -3'
miRNA:   3'- -GGGUGGUGGua-------------GG-GGGCUCUCU----ACUg -5'
5128 5' -57.2 NC_001798.1 + 31945 0.66 0.866749
Target:  5'- cUCCGCCGCCccgcgcucgccccucGcCCCCCaGGGGGUGGg -3'
miRNA:   3'- -GGGUGGUGG---------------UaGGGGGcUCUCUACUg -5'
5128 5' -57.2 NC_001798.1 + 3547 0.66 0.863793
Target:  5'- gCCCGCCGCCAUggcguaCCCCaGGuGG-GGCa -3'
miRNA:   3'- -GGGUGGUGGUAg-----GGGGcUCuCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 58675 0.66 0.863793
Target:  5'- gCCCGCCACCAccgCCgCCGucAGGGccgcGGCg -3'
miRNA:   3'- -GGGUGGUGGUa--GGgGGC--UCUCua--CUG- -5'
5128 5' -57.2 NC_001798.1 + 9636 0.66 0.863793
Target:  5'- cCCCAgCACCG--CCCCGAGgcgcAGcgGGCc -3'
miRNA:   3'- -GGGUgGUGGUagGGGGCUC----UCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 54451 0.66 0.863793
Target:  5'- aCCC-CCGCCGcUCCCCCGGGc------ -3'
miRNA:   3'- -GGGuGGUGGU-AGGGGGCUCucuacug -5'
5128 5' -57.2 NC_001798.1 + 92232 0.66 0.863793
Target:  5'- aCCACCGUCAagguUCCUCCGGGGccGAUGGg -3'
miRNA:   3'- gGGUGGUGGU----AGGGGGCUCU--CUACUg -5'
5128 5' -57.2 NC_001798.1 + 145628 0.66 0.863793
Target:  5'- cCCCACCGCC--CCgCCCGgcAGGGG-GGCc -3'
miRNA:   3'- -GGGUGGUGGuaGG-GGGC--UCUCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 131385 0.66 0.863793
Target:  5'- cCCCugggggcCCGgCGUCCCaUCG-GGGAUGACg -3'
miRNA:   3'- -GGGu------GGUgGUAGGG-GGCuCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 59103 0.66 0.861554
Target:  5'- gCCCAgCguggcggccuggaGCCAgagaugcgcgaaCCCCCGAGcGAUGGCa -3'
miRNA:   3'- -GGGUgG-------------UGGUa-----------GGGGGCUCuCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 109878 0.66 0.856261
Target:  5'- uCCCugCGCUucgAUCUCgCCGAGGGcgGGu -3'
miRNA:   3'- -GGGugGUGG---UAGGG-GGCUCUCuaCUg -5'
5128 5' -57.2 NC_001798.1 + 119491 0.66 0.856261
Target:  5'- cCCCGguuauCCGCUA-CCCCUGAGGcGggGGCa -3'
miRNA:   3'- -GGGU-----GGUGGUaGGGGGCUCU-CuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 131329 0.67 0.848533
Target:  5'- aCCaCGCCGCCcgCgCCCCGGGcgc-GACg -3'
miRNA:   3'- -GG-GUGGUGGuaG-GGGGCUCucuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 3865 0.67 0.848533
Target:  5'- gCCCAgcCCGCCGUacagcacgcgCCCCGGGGGcgGGg -3'
miRNA:   3'- -GGGU--GGUGGUAg---------GGGGCUCUCuaCUg -5'
5128 5' -57.2 NC_001798.1 + 57903 0.67 0.84775
Target:  5'- cCCCGCCcCCAuuuccuuccccccUCCCCCcGGGGAUcGGa -3'
miRNA:   3'- -GGGUGGuGGU-------------AGGGGGcUCUCUA-CUg -5'
5128 5' -57.2 NC_001798.1 + 83763 0.67 0.840615
Target:  5'- cCCCGCCGCCAgcaacagaagCgCCGGGGGGcccgGACg -3'
miRNA:   3'- -GGGUGGUGGUag--------GgGGCUCUCUa---CUG- -5'
5128 5' -57.2 NC_001798.1 + 22630 0.67 0.832514
Target:  5'- cCCCACUGCCG-CCCCUGA-AGAaGAa -3'
miRNA:   3'- -GGGUGGUGGUaGGGGGCUcUCUaCUg -5'
5128 5' -57.2 NC_001798.1 + 90698 0.67 0.824236
Target:  5'- gCCGCCGCCAggCgCUCGcAGAGAUcGCg -3'
miRNA:   3'- gGGUGGUGGUa-GgGGGC-UCUCUAcUG- -5'
5128 5' -57.2 NC_001798.1 + 38708 0.67 0.824236
Target:  5'- aCCCGCCAUgCAggCCCCCGGGAu----- -3'
miRNA:   3'- -GGGUGGUG-GUa-GGGGGCUCUcuacug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.