miRNA display CGI


Results 61 - 80 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 3' -62.1 NC_001798.1 + 1199 0.67 0.622313
Target:  5'- cCGCGGcCAgcaccgucCCCGC-GCGGccCGCGGCc -3'
miRNA:   3'- -GCGCCuGU--------GGGCGuCGCCcaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 4837 0.67 0.622313
Target:  5'- -cCGGGC-CgCGCGGCGGGgcgACGGUc -3'
miRNA:   3'- gcGCCUGuGgGCGUCGCCCag-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 146303 0.67 0.622313
Target:  5'- aGUGGGCGgCCG-GGCGGGaggAUGGCg -3'
miRNA:   3'- gCGCCUGUgGGCgUCGCCCag-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 53895 0.67 0.621342
Target:  5'- cCGCGGAgacguuugcgcgcCACCUGgAccGCGGGcccaGCGGCa -3'
miRNA:   3'- -GCGCCU-------------GUGGGCgU--CGCCCag--UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 48676 0.67 0.621342
Target:  5'- gCGCGGGggacgggcCGCCCGgAGCGGuggggaaGUCacgagguuugggGCGGCa -3'
miRNA:   3'- -GCGCCU--------GUGGGCgUCGCC-------CAG------------UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 70268 0.67 0.620371
Target:  5'- cCGCGGccaaacuGCACgCCGCcacGGCGGcGUuucuguugucgggCGCGGCg -3'
miRNA:   3'- -GCGCC-------UGUG-GGCG---UCGCC-CA-------------GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 132696 0.67 0.612606
Target:  5'- aCGCGG-CGCaggCGCGG-GGGUCGC-GCa -3'
miRNA:   3'- -GCGCCuGUGg--GCGUCgCCCAGUGcCG- -5'
5129 3' -62.1 NC_001798.1 + 30760 0.67 0.612606
Target:  5'- gCGUGGAgGCCgagGCGgccguGCGGGccggCACGGCc -3'
miRNA:   3'- -GCGCCUgUGGg--CGU-----CGCCCa---GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 125664 0.67 0.612606
Target:  5'- gCGgGGGCGgCUGaggucaGGgGGGUCGgGGCg -3'
miRNA:   3'- -GCgCCUGUgGGCg-----UCgCCCAGUgCCG- -5'
5129 3' -62.1 NC_001798.1 + 27921 0.67 0.602911
Target:  5'- cCGgGGuC-CCCGCcGCcgGGGUCcCGGCg -3'
miRNA:   3'- -GCgCCuGuGGGCGuCG--CCCAGuGCCG- -5'
5129 3' -62.1 NC_001798.1 + 109434 0.67 0.602911
Target:  5'- gGCGGccCGCCUGCGGCuGGagGCGcGCc -3'
miRNA:   3'- gCGCCu-GUGGGCGUCGcCCagUGC-CG- -5'
5129 3' -62.1 NC_001798.1 + 16172 0.67 0.602911
Target:  5'- -aCGGGCgGCCCGCGGggacCGGGgggacgCACGGg -3'
miRNA:   3'- gcGCCUG-UGGGCGUC----GCCCa-----GUGCCg -5'
5129 3' -62.1 NC_001798.1 + 115761 0.67 0.602911
Target:  5'- cCGgGGGCAUCCaggccaccugGC-GCGuGGUCaACGGCa -3'
miRNA:   3'- -GCgCCUGUGGG----------CGuCGC-CCAG-UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 111782 0.67 0.600007
Target:  5'- gCGCGGGUGCCCGUGaucacgacauccguGCGccGGUCGCGGg -3'
miRNA:   3'- -GCGCCUGUGGGCGU--------------CGC--CCAGUGCCg -5'
5129 3' -62.1 NC_001798.1 + 31877 0.67 0.598071
Target:  5'- gGCGGcgGCCCGCccccggaagaggcGCGGGUCggacucgggccccGCGGCc -3'
miRNA:   3'- gCGCCugUGGGCGu------------CGCCCAG-------------UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 83783 0.67 0.597104
Target:  5'- gCGCcgGGGgGCCCGgAcGCGGGgcccggaacaacugCACGGCc -3'
miRNA:   3'- -GCG--CCUgUGGGCgU-CGCCCa-------------GUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 95508 0.67 0.593236
Target:  5'- -aUGGAguuuacCACCCGCGcccuggagcGCGGG-CAUGGCg -3'
miRNA:   3'- gcGCCU------GUGGGCGU---------CGCCCaGUGCCG- -5'
5129 3' -62.1 NC_001798.1 + 23832 0.67 0.593236
Target:  5'- cCG-GGGCGCgUGCuguacGGCGGG-CugGGCg -3'
miRNA:   3'- -GCgCCUGUGgGCG-----UCGCCCaGugCCG- -5'
5129 3' -62.1 NC_001798.1 + 22268 0.67 0.593236
Target:  5'- gCGcCGGGCGCuaaugagaugCCGC-GCGGGcggaGCGGCg -3'
miRNA:   3'- -GC-GCCUGUG----------GGCGuCGCCCag--UGCCG- -5'
5129 3' -62.1 NC_001798.1 + 126436 0.67 0.593236
Target:  5'- uGCGGccaagcuaagGCGCCCGCcccuGCGcaGGUCcgagACGGCc -3'
miRNA:   3'- gCGCC----------UGUGGGCGu---CGC--CCAG----UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.