Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5129 | 5' | -56.1 | NC_001798.1 | + | 140916 | 0.7 | 0.685657 |
Target: 5'- -gGCUGUGCuGCgcgACGACaGCUUCGUg -3' miRNA: 3'- gaCGGCGCGcCGa--UGCUGaUGAAGCA- -5' |
|||||||
5129 | 5' | -56.1 | NC_001798.1 | + | 2501 | 0.71 | 0.655185 |
Target: 5'- -cGCCGCGgGGCgcgGCGGCcGCggCGg -3' miRNA: 3'- gaCGGCGCgCCGa--UGCUGaUGaaGCa -5' |
|||||||
5129 | 5' | -56.1 | NC_001798.1 | + | 90780 | 0.72 | 0.598027 |
Target: 5'- aCUGCCGCGUgccguagacgugaacGGCgacGCGAUgGCUUCGg -3' miRNA: 3'- -GACGGCGCG---------------CCGa--UGCUGaUGAAGCa -5' |
|||||||
5129 | 5' | -56.1 | NC_001798.1 | + | 117210 | 0.72 | 0.583809 |
Target: 5'- -cGUCGUGCGGC-AgGACcGCUUCGUg -3' miRNA: 3'- gaCGGCGCGCCGaUgCUGaUGAAGCA- -5' |
|||||||
5129 | 5' | -56.1 | NC_001798.1 | + | 4840 | 0.77 | 0.339066 |
Target: 5'- -gGCCGCGCGGCgggGCGACgguccgGgUUCGg -3' miRNA: 3'- gaCGGCGCGCCGa--UGCUGa-----UgAAGCa -5' |
|||||||
5129 | 5' | -56.1 | NC_001798.1 | + | 134700 | 1.08 | 0.00348 |
Target: 5'- gCUGCCGCGCGGCUACGACUACUUCGUg -3' miRNA: 3'- -GACGGCGCGCCGAUGCUGAUGAAGCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home