miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 3' -57.2 NC_001798.1 + 134542 1.07 0.003446
Target:  5'- gUCACCAUCACGACGAGGACCGCGCGUu -3'
miRNA:   3'- -AGUGGUAGUGCUGCUCCUGGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 71044 0.79 0.239409
Target:  5'- uUCGCaGUCGCGAgGAGGugCGCGUGUc -3'
miRNA:   3'- -AGUGgUAGUGCUgCUCCugGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 33809 0.76 0.368698
Target:  5'- cUC-CCAUCGgGGCGAGGGggcUCGCGCGUu -3'
miRNA:   3'- -AGuGGUAGUgCUGCUCCU---GGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 100178 0.75 0.418379
Target:  5'- cCACCGUCGgcCGGCGGGuGAgCGCGCGc -3'
miRNA:   3'- aGUGGUAGU--GCUGCUC-CUgGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 97627 0.74 0.427047
Target:  5'- ---aCAUCGCGACGcGGGCCGcCGCGg -3'
miRNA:   3'- agugGUAGUGCUGCuCCUGGC-GCGCa -5'
5130 3' -57.2 NC_001798.1 + 39459 0.74 0.462749
Target:  5'- gCGCCAUCAgCGGaggGGGGGCCugGCGCGUg -3'
miRNA:   3'- aGUGGUAGU-GCUg--CUCCUGG--CGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 28584 0.73 0.481179
Target:  5'- gCGCCAUCugGugGccuGGGagacgGCCGCGCGc -3'
miRNA:   3'- aGUGGUAGugCugC---UCC-----UGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 4621 0.73 0.49712
Target:  5'- gCGCCGUCgcgcuccgggggggGCGACG-GGAUCGUGCGa -3'
miRNA:   3'- aGUGGUAG--------------UGCUGCuCCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 117205 0.73 0.509468
Target:  5'- uUCACCGUCguGCGGC-AGGACCGCuuCGUg -3'
miRNA:   3'- -AGUGGUAG--UGCUGcUCCUGGCGc-GCA- -5'
5130 3' -57.2 NC_001798.1 + 134670 0.72 0.557065
Target:  5'- aCACCcgcagcggGUCACGGCGcGGGugcugcuGCCGCGCGg -3'
miRNA:   3'- aGUGG--------UAGUGCUGC-UCC-------UGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 84538 0.72 0.558052
Target:  5'- cCGCCAUCGCGACcGGGcaagGgUGCGCGUu -3'
miRNA:   3'- aGUGGUAGUGCUGcUCC----UgGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 77184 0.72 0.564967
Target:  5'- cCGCCGUCGCGACGGcaagucccgcGGcgacgguggacgcgGCCGUGCGg -3'
miRNA:   3'- aGUGGUAGUGCUGCU----------CC--------------UGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 3260 0.72 0.577869
Target:  5'- gCGCCGUagcCGGCGGGcACCGCGCGc -3'
miRNA:   3'- aGUGGUAgu-GCUGCUCcUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 24817 0.71 0.607858
Target:  5'- gCGCCu--GCG-CGGGGACCuGCGCGUg -3'
miRNA:   3'- aGUGGuagUGCuGCUCCUGG-CGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 26344 0.71 0.607858
Target:  5'- aCGCCGUgCGCGGCGGcccggcGGAgCUGCGCGg -3'
miRNA:   3'- aGUGGUA-GUGCUGCU------CCU-GGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 36492 0.71 0.616894
Target:  5'- gCGCCggCGCGACGcgggcggccgggcGGGGgCGCGCGg -3'
miRNA:   3'- aGUGGuaGUGCUGC-------------UCCUgGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 115893 0.71 0.627949
Target:  5'- cCGCCGUcCGCGGggcguuCGAGGACCGCaGCu- -3'
miRNA:   3'- aGUGGUA-GUGCU------GCUCCUGGCG-CGca -5'
5130 3' -57.2 NC_001798.1 + 26031 0.71 0.627949
Target:  5'- uUCGCg--CGCGugGAGG-CCGCGCa- -3'
miRNA:   3'- -AGUGguaGUGCugCUCCuGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 69479 0.71 0.638003
Target:  5'- -gGCCGUCGCGGCGAGcGAUgG-GCGg -3'
miRNA:   3'- agUGGUAGUGCUGCUC-CUGgCgCGCa -5'
5130 3' -57.2 NC_001798.1 + 140087 0.71 0.638003
Target:  5'- aUUAUCGUCAuCGACGAGG-CCGgGCu- -3'
miRNA:   3'- -AGUGGUAGU-GCUGCUCCuGGCgCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.