miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 3' -57.2 NC_001798.1 + 1532 0.67 0.835338
Target:  5'- gCGCCGggagCACGGCGcGGcgguACuCGCGCGg -3'
miRNA:   3'- aGUGGUa---GUGCUGCuCC----UG-GCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 2206 0.66 0.866312
Target:  5'- cCGCCG-CGCGGCGcagcGGGCCcgagGCGCGc -3'
miRNA:   3'- aGUGGUaGUGCUGCu---CCUGG----CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 2300 0.67 0.827132
Target:  5'- -gGCCAgcgCGCGcgggucgaacAUGAGGGCCGgGCGc -3'
miRNA:   3'- agUGGUa--GUGC----------UGCUCCUGGCgCGCa -5'
5130 3' -57.2 NC_001798.1 + 2570 0.69 0.73697
Target:  5'- -gGCCG-CGgGGCGGGGGgcguCCGCGCGg -3'
miRNA:   3'- agUGGUaGUgCUGCUCCU----GGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 3260 0.72 0.577869
Target:  5'- gCGCCGUagcCGGCGGGcACCGCGCGc -3'
miRNA:   3'- aGUGGUAgu-GCUGCUCcUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 4209 0.67 0.818755
Target:  5'- gUCugCggCGCuGGCGGGGGCgCGgGCGg -3'
miRNA:   3'- -AGugGuaGUG-CUGCUCCUG-GCgCGCa -5'
5130 3' -57.2 NC_001798.1 + 4621 0.73 0.49712
Target:  5'- gCGCCGUCgcgcuccgggggggGCGACG-GGAUCGUGCGa -3'
miRNA:   3'- aGUGGUAG--------------UGCUGCuCCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 4819 0.67 0.827132
Target:  5'- cCACCGUgcCACc-CGAacccGGGCCGCGCGg -3'
miRNA:   3'- aGUGGUA--GUGcuGCU----CCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 4958 0.69 0.707811
Target:  5'- cCGCCAUCGCGACcucGGCCcCGCGg -3'
miRNA:   3'- aGUGGUAGUGCUGcucCUGGcGCGCa -5'
5130 3' -57.2 NC_001798.1 + 5989 0.68 0.801518
Target:  5'- aCACCGgcugCGCGGCGgagaccGGGACgGCaGCGg -3'
miRNA:   3'- aGUGGUa---GUGCUGC------UCCUGgCG-CGCa -5'
5130 3' -57.2 NC_001798.1 + 10684 0.68 0.809352
Target:  5'- gCGCCAccCACGACGggcgcagGGGACCGCagGCa- -3'
miRNA:   3'- aGUGGUa-GUGCUGC-------UCCUGGCG--CGca -5'
5130 3' -57.2 NC_001798.1 + 15570 0.69 0.746525
Target:  5'- cCGCCGcCGCGGCGGGGAgUG-GCGa -3'
miRNA:   3'- aGUGGUaGUGCUGCUCCUgGCgCGCa -5'
5130 3' -57.2 NC_001798.1 + 16879 0.67 0.827132
Target:  5'- aCACCAaaGCc-CGAGGGCCGCGUc- -3'
miRNA:   3'- aGUGGUagUGcuGCUCCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 17964 0.66 0.880602
Target:  5'- uUCGCagGUCcggacguCGGgGGGGGCUGCGCGg -3'
miRNA:   3'- -AGUGg-UAGu------GCUgCUCCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 22126 0.66 0.871408
Target:  5'- cUCGCCGgccccuuuggggC-CGGCGGGGGCCaacgggaGCGCGg -3'
miRNA:   3'- -AGUGGUa-----------GuGCUGCUCCUGG-------CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 22349 0.69 0.727326
Target:  5'- -gGgCGUCGgGGCG-GGGCCGCGCa- -3'
miRNA:   3'- agUgGUAGUgCUGCuCCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 23669 0.66 0.866312
Target:  5'- -gGCCcgCGCGGCGGuGGCCGgcCGCGa -3'
miRNA:   3'- agUGGuaGUGCUGCUcCUGGC--GCGCa -5'
5130 3' -57.2 NC_001798.1 + 24012 0.66 0.857344
Target:  5'- aCGCgGagGCGAUGGGGuggcuccagaacCCGCGCGUg -3'
miRNA:   3'- aGUGgUagUGCUGCUCCu-----------GGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 24162 0.69 0.745573
Target:  5'- aCGCCAUgGCGGCGggccgcuucggcuGGGGCCugGCGCa- -3'
miRNA:   3'- aGUGGUAgUGCUGC-------------UCCUGG--CGCGca -5'
5130 3' -57.2 NC_001798.1 + 24210 0.67 0.851208
Target:  5'- cCGCCGUgGCcAUGAGccgccgcuacGACCGCGCGc -3'
miRNA:   3'- aGUGGUAgUGcUGCUC----------CUGGCGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.