miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 3' -57.2 NC_001798.1 + 117377 0.66 0.873561
Target:  5'- cCGCCGUCGCGGCcacGGGcACCGUccGCa- -3'
miRNA:   3'- aGUGGUAGUGCUGc--UCC-UGGCG--CGca -5'
5130 3' -57.2 NC_001798.1 + 86248 0.66 0.872846
Target:  5'- cCACCGUgcugaagCACGGcCGGGGGCgCGgGCGc -3'
miRNA:   3'- aGUGGUA-------GUGCU-GCUCCUG-GCgCGCa -5'
5130 3' -57.2 NC_001798.1 + 22126 0.66 0.871408
Target:  5'- cUCGCCGgccccuuuggggC-CGGCGGGGGCCaacgggaGCGCGg -3'
miRNA:   3'- -AGUGGUa-----------GuGCUGCUCCUGG-------CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 2206 0.66 0.866312
Target:  5'- cCGCCG-CGCGGCGcagcGGGCCcgagGCGCGc -3'
miRNA:   3'- aGUGGUaGUGCUGCu---CCUGG----CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 135146 0.66 0.866312
Target:  5'- -gGCCGUCGgGcCGGucuGGACgGCGCGg -3'
miRNA:   3'- agUGGUAGUgCuGCU---CCUGgCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 25572 0.66 0.866312
Target:  5'- cUCGCCGcUGCcgGGCGAGGACCuggcCGCGg -3'
miRNA:   3'- -AGUGGUaGUG--CUGCUCCUGGc---GCGCa -5'
5130 3' -57.2 NC_001798.1 + 23669 0.66 0.866312
Target:  5'- -gGCCcgCGCGGCGGuGGCCGgcCGCGa -3'
miRNA:   3'- agUGGuaGUGCUGCUcCUGGC--GCGCa -5'
5130 3' -57.2 NC_001798.1 + 99043 0.66 0.865575
Target:  5'- cCACCGcuacucccaguUUAUGGggauauuCGAGGACCGCGCc- -3'
miRNA:   3'- aGUGGU-----------AGUGCU-------GCUCCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 70571 0.66 0.858859
Target:  5'- gCACCAcgGCGGCccuGGGGCCgguGCGCGUc -3'
miRNA:   3'- aGUGGUagUGCUGc--UCCUGG---CGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 79839 0.66 0.858859
Target:  5'- gUCGCCAUCgccagGCGACGuGGGgCGCcucgauggacGCGg -3'
miRNA:   3'- -AGUGGUAG-----UGCUGCuCCUgGCG----------CGCa -5'
5130 3' -57.2 NC_001798.1 + 113113 0.66 0.858859
Target:  5'- aUCGCgAgcugguaGACGAGG-CCGCGUGUg -3'
miRNA:   3'- -AGUGgUagug---CUGCUCCuGGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 24012 0.66 0.857344
Target:  5'- aCGCgGagGCGAUGGGGuggcuccagaacCCGCGCGUg -3'
miRNA:   3'- aGUGgUagUGCUGCUCCu-----------GGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 24210 0.67 0.851208
Target:  5'- cCGCCGUgGCcAUGAGccgccgcuacGACCGCGCGc -3'
miRNA:   3'- aGUGGUAgUGcUGCUC----------CUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 92412 0.67 0.851208
Target:  5'- gUCGgguCCcgCACGACGggccuugggGGGACCGCG-GUg -3'
miRNA:   3'- -AGU---GGuaGUGCUGC---------UCCUGGCGCgCA- -5'
5130 3' -57.2 NC_001798.1 + 97454 0.67 0.843365
Target:  5'- gCGCCGcgugcuggCGCGGCuGGGGGCCggcgGCGCGa -3'
miRNA:   3'- aGUGGUa-------GUGCUG-CUCCUGG----CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 128565 0.67 0.843365
Target:  5'- cCugCuguuUCGCuacuGCGuGGGCCGCGCGg -3'
miRNA:   3'- aGugGu---AGUGc---UGCuCCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 24572 0.67 0.843365
Target:  5'- -gGCCGgcgCGCGGaGGcGGGCCGCGUGg -3'
miRNA:   3'- agUGGUa--GUGCUgCU-CCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 121534 0.67 0.842571
Target:  5'- aCACgGUCGCGGCGcugcgccuggcguGGGGCC-CGUGg -3'
miRNA:   3'- aGUGgUAGUGCUGC-------------UCCUGGcGCGCa -5'
5130 3' -57.2 NC_001798.1 + 77724 0.67 0.835338
Target:  5'- cCGCCggcGUCgagGCGGCGcuGGACCGCGuCGa -3'
miRNA:   3'- aGUGG---UAG---UGCUGCu-CCUGGCGC-GCa -5'
5130 3' -57.2 NC_001798.1 + 52500 0.67 0.835338
Target:  5'- gCGCCGgcgCagggACGACGcGGcGGCCGCGCGc -3'
miRNA:   3'- aGUGGUa--G----UGCUGC-UC-CUGGCGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.