miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 3' -57.2 NC_001798.1 + 122824 0.66 0.88743
Target:  5'- -gGCCAggGCGGuCGGGGGCgGCgGCGg -3'
miRNA:   3'- agUGGUagUGCU-GCUCCUGgCG-CGCa -5'
5130 3' -57.2 NC_001798.1 + 89134 0.66 0.893389
Target:  5'- cCGCCuccaggugCGCGACGGccucGGGCCGCagggagaGCGUa -3'
miRNA:   3'- aGUGGua------GUGCUGCU----CCUGGCG-------CGCA- -5'
5130 3' -57.2 NC_001798.1 + 53647 0.66 0.894041
Target:  5'- aCGCCGcCGCGgugGCGGGG-UUGCGCGa -3'
miRNA:   3'- aGUGGUaGUGC---UGCUCCuGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 102557 0.66 0.894041
Target:  5'- aCGCgGUCAgCGGCGGGuGGCgggGCGCGg -3'
miRNA:   3'- aGUGgUAGU-GCUGCUC-CUGg--CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 132690 0.66 0.894041
Target:  5'- aCGCCGaCGCGgcgcaggcGCGGGGGUCGCGCa- -3'
miRNA:   3'- aGUGGUaGUGC--------UGCUCCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 94553 0.66 0.880602
Target:  5'- gCGCCAaCGCGucCGAGGccGCCaagGCGCGg -3'
miRNA:   3'- aGUGGUaGUGCu-GCUCC--UGG---CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 86589 0.66 0.880602
Target:  5'- -gACCAUCGCGACGA--GCUGCaGCu- -3'
miRNA:   3'- agUGGUAGUGCUGCUccUGGCG-CGca -5'
5130 3' -57.2 NC_001798.1 + 113113 0.66 0.858859
Target:  5'- aUCGCgAgcugguaGACGAGG-CCGCGUGUg -3'
miRNA:   3'- -AGUGgUagug---CUGCUCCuGGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 99043 0.66 0.865575
Target:  5'- cCACCGcuacucccaguUUAUGGggauauuCGAGGACCGCGCc- -3'
miRNA:   3'- aGUGGU-----------AGUGCU-------GCUCCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 23669 0.66 0.866312
Target:  5'- -gGCCcgCGCGGCGGuGGCCGgcCGCGa -3'
miRNA:   3'- agUGGuaGUGCUGCUcCUGGC--GCGCa -5'
5130 3' -57.2 NC_001798.1 + 25572 0.66 0.866312
Target:  5'- cUCGCCGcUGCcgGGCGAGGACCuggcCGCGg -3'
miRNA:   3'- -AGUGGUaGUG--CUGCUCCUGGc---GCGCa -5'
5130 3' -57.2 NC_001798.1 + 135146 0.66 0.866312
Target:  5'- -gGCCGUCGgGcCGGucuGGACgGCGCGg -3'
miRNA:   3'- agUGGUAGUgCuGCU---CCUGgCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 2206 0.66 0.866312
Target:  5'- cCGCCG-CGCGGCGcagcGGGCCcgagGCGCGc -3'
miRNA:   3'- aGUGGUaGUGCUGCu---CCUGG----CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 22126 0.66 0.871408
Target:  5'- cUCGCCGgccccuuuggggC-CGGCGGGGGCCaacgggaGCGCGg -3'
miRNA:   3'- -AGUGGUa-----------GuGCUGCUCCUGG-------CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 86248 0.66 0.872846
Target:  5'- cCACCGUgcugaagCACGGcCGGGGGCgCGgGCGc -3'
miRNA:   3'- aGUGGUA-------GUGCU-GCUCCUG-GCgCGCa -5'
5130 3' -57.2 NC_001798.1 + 68127 0.66 0.873561
Target:  5'- -gGCCAagACGGCGAGGGCggaguugGUGUGUa -3'
miRNA:   3'- agUGGUagUGCUGCUCCUGg------CGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 144529 0.66 0.873561
Target:  5'- gCGCCGaccUCGCGuCGGGGAgacCCGC-CGUg -3'
miRNA:   3'- aGUGGU---AGUGCuGCUCCU---GGCGcGCA- -5'
5130 3' -57.2 NC_001798.1 + 117377 0.66 0.873561
Target:  5'- cCGCCGUCGCGGCcacGGGcACCGUccGCa- -3'
miRNA:   3'- aGUGGUAGUGCUGc--UCC-UGGCG--CGca -5'
5130 3' -57.2 NC_001798.1 + 17964 0.66 0.880602
Target:  5'- uUCGCagGUCcggacguCGGgGGGGGCUGCGCGg -3'
miRNA:   3'- -AGUGg-UAGu------GCUgCUCCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 30727 0.66 0.880602
Target:  5'- gCACCAUCccgauagugaACGACccccGGACC-CGCGUg -3'
miRNA:   3'- aGUGGUAG----------UGCUGcu--CCUGGcGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.