miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 5' -53.2 NC_001798.1 + 25242 0.66 0.967013
Target:  5'- cGAggGCcCCgACCCgcagGGCGgcuggcgCCGCCa -3'
miRNA:   3'- -CUuaUGuGG-UGGGa---CCGCaaa----GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 24157 0.66 0.967013
Target:  5'- gGggUACGCCAUggcGGCGgg-CCGCUu -3'
miRNA:   3'- -CuuAUGUGGUGggaCCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 53268 0.66 0.967013
Target:  5'- ---cGCGCCGacgaCCUgcagccGGCGUUUCUGaCCg -3'
miRNA:   3'- cuuaUGUGGUg---GGA------CCGCAAAGGC-GG- -5'
5130 5' -53.2 NC_001798.1 + 132061 0.66 0.967013
Target:  5'- gGAGUACGCCauGCCCggauuuucGGCGcg-CCGUUg -3'
miRNA:   3'- -CUUAUGUGG--UGGGa-------CCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 31474 0.66 0.963719
Target:  5'- ---cGCGCCGCCCcgcgGGCcccgggCCGCUc -3'
miRNA:   3'- cuuaUGUGGUGGGa---CCGcaaa--GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 44972 0.66 0.963719
Target:  5'- ---gGCuCCGCCCUcggaGGCGgagCCGCg -3'
miRNA:   3'- cuuaUGuGGUGGGA----CCGCaaaGGCGg -5'
5130 5' -53.2 NC_001798.1 + 108543 0.66 0.963719
Target:  5'- ---cGCACaACCCcGGCGccUCCGCg -3'
miRNA:   3'- cuuaUGUGgUGGGaCCGCaaAGGCGg -5'
5130 5' -53.2 NC_001798.1 + 137931 0.66 0.963719
Target:  5'- ---cGCGCCucCCCcGGCcgcccggUCCGCCg -3'
miRNA:   3'- cuuaUGUGGu-GGGaCCGcaa----AGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 70617 0.67 0.960202
Target:  5'- gGAGUGgAUCgACCgCUGGCGga-CCGUCa -3'
miRNA:   3'- -CUUAUgUGG-UGG-GACCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 150671 0.67 0.960202
Target:  5'- ----cCGCCGCCgC-GGCGUcUUCGCCc -3'
miRNA:   3'- cuuauGUGGUGG-GaCCGCAaAGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 139192 0.67 0.960202
Target:  5'- -uGUACACCcccugACCCUcGGUGUaccccaUCUGCCc -3'
miRNA:   3'- cuUAUGUGG-----UGGGA-CCGCAa-----AGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 29473 0.67 0.956456
Target:  5'- gGAGUACACCcgguugguCCCcggGGaCGgggCCGCCc -3'
miRNA:   3'- -CUUAUGUGGu-------GGGa--CC-GCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 104099 0.67 0.956456
Target:  5'- ---aGCGCCG-CCUGGCGgg--CGCCc -3'
miRNA:   3'- cuuaUGUGGUgGGACCGCaaagGCGG- -5'
5130 5' -53.2 NC_001798.1 + 63872 0.67 0.952477
Target:  5'- cGGAgAgGCCGCCCaGGU-UUUCCGUCa -3'
miRNA:   3'- -CUUaUgUGGUGGGaCCGcAAAGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 128150 0.67 0.952477
Target:  5'- ---aGCGCCACCugcgcggccugCUGcGCGgcgUCCGCUc -3'
miRNA:   3'- cuuaUGUGGUGG-----------GAC-CGCaa-AGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 72498 0.67 0.952477
Target:  5'- ---aGCGCCugggGCCCUGGCGcc-CCgagGCCa -3'
miRNA:   3'- cuuaUGUGG----UGGGACCGCaaaGG---CGG- -5'
5130 5' -53.2 NC_001798.1 + 78831 0.67 0.950819
Target:  5'- cGAcgGCcCCGgcCCCUGGCGcggcacgccggCCGCCu -3'
miRNA:   3'- -CUuaUGuGGU--GGGACCGCaaa--------GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 57148 0.67 0.948261
Target:  5'- cGAGUACAgCCgcgggcuggcGCCCgggccGGCGcccUCCGCCc -3'
miRNA:   3'- -CUUAUGU-GG----------UGGGa----CCGCaa-AGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 51556 0.67 0.948261
Target:  5'- -cGUGCGCUcgGCCCUGGCccugggacaUCCgGCCg -3'
miRNA:   3'- cuUAUGUGG--UGGGACCGcaa------AGG-CGG- -5'
5130 5' -53.2 NC_001798.1 + 26072 0.67 0.948261
Target:  5'- ---cGCGCCGCCgCU-GCGccUCUGCCg -3'
miRNA:   3'- cuuaUGUGGUGG-GAcCGCaaAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.