miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 136 0.68 0.478792
Target:  5'- aGCcGGCCgCUcccCCGCGgGCGcCGCCc -3'
miRNA:   3'- gCGaCCGG-GAca-GGCGCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 124424 0.68 0.478792
Target:  5'- aGCUGcCCCgcgGUCgCGCGgGCcGUgGCCa -3'
miRNA:   3'- gCGACcGGGa--CAG-GCGCgCG-CAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 79137 0.68 0.469918
Target:  5'- gCGgaGGCCguggaggagCUGggCGCGCGCGUCaCCa -3'
miRNA:   3'- -GCgaCCGG---------GACagGCGCGCGCAGcGG- -5'
5131 5' -63.5 NC_001798.1 + 3456 0.68 0.469918
Target:  5'- gGCUGgucagcaggaaGCCCU-UCUGCGCGCgGUCGUa -3'
miRNA:   3'- gCGAC-----------CGGGAcAGGCGCGCG-CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 3334 0.68 0.469918
Target:  5'- gGCgGGCUUc--CCGCGgGCGUCGUCg -3'
miRNA:   3'- gCGaCCGGGacaGGCGCgCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 111992 0.69 0.418549
Target:  5'- aGCUcgauGaCCCUGUCuCGCGCGCGcacgCGCa -3'
miRNA:   3'- gCGAc---C-GGGACAG-GCGCGCGCa---GCGg -5'
5131 5' -63.5 NC_001798.1 + 85292 0.69 0.418549
Target:  5'- gGCgggGGCCgggGUCCGCcCGCGgccCGCCc -3'
miRNA:   3'- gCGa--CCGGga-CAGGCGcGCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 135322 0.69 0.418549
Target:  5'- uGCUGGagcgCCUGgugccggaCGCGUGCGaCGCCu -3'
miRNA:   3'- gCGACCg---GGACag------GCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 24803 0.69 0.407874
Target:  5'- gCGCUGGUgCUGaUgCGCcugcgcggggaccuGCGCGUgGCCg -3'
miRNA:   3'- -GCGACCGgGAC-AgGCG--------------CGCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 115597 0.69 0.402198
Target:  5'- uCGCccacGGCCggGUCCG-GUGgGUCGCCg -3'
miRNA:   3'- -GCGa---CCGGgaCAGGCgCGCgCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 110000 0.69 0.426037
Target:  5'- gCGCUGggcgcacuacaacGCCCUGaUCCGCGCcuuCGUC-CCg -3'
miRNA:   3'- -GCGAC-------------CGGGAC-AGGCGCGc--GCAGcGG- -5'
5131 5' -63.5 NC_001798.1 + 49451 0.69 0.426874
Target:  5'- uGCUcGGCCCUGUaCCG-GUaccuGCG-CGCCa -3'
miRNA:   3'- gCGA-CCGGGACA-GGCgCG----CGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 25488 0.69 0.426874
Target:  5'- gCGCgccucgGGCCCgcugcgCCGCGCGgCGgccuggaugCGCCa -3'
miRNA:   3'- -GCGa-----CCGGGaca---GGCGCGC-GCa--------GCGG- -5'
5131 5' -63.5 NC_001798.1 + 25996 0.69 0.430232
Target:  5'- uGCUGGCCUccggccgcgUGUucgggccgggggucuUCGCGCGCGUggagGCCg -3'
miRNA:   3'- gCGACCGGG---------ACA---------------GGCGCGCGCAg---CGG- -5'
5131 5' -63.5 NC_001798.1 + 43148 0.69 0.435297
Target:  5'- aCGCgGGCCCagucGUCC-CGCGC--CGCCg -3'
miRNA:   3'- -GCGaCCGGGa---CAGGcGCGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 79390 0.69 0.435297
Target:  5'- gCGCgGGCgCggaGUCCGCGCcCG-CGCCc -3'
miRNA:   3'- -GCGaCCGgGa--CAGGCGCGcGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 39499 0.69 0.438693
Target:  5'- cCGCgGGCCCccggagacgucgagcUGcuccccUCCGCGcCGCGccUCGCCg -3'
miRNA:   3'- -GCGaCCGGG---------------AC------AGGCGC-GCGC--AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 68222 0.69 0.443816
Target:  5'- gCGCaGGCCCgccaccCCGC-CGCG-CGCCa -3'
miRNA:   3'- -GCGaCCGGGaca---GGCGcGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 31284 0.7 0.394176
Target:  5'- gGC-GGCCCUG-CCGuCGCGgcCGUCGUg -3'
miRNA:   3'- gCGaCCGGGACaGGC-GCGC--GCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 18596 0.7 0.386258
Target:  5'- aGCa-GCCCccccggGUCCGCGCGCcGUccCGCCg -3'
miRNA:   3'- gCGacCGGGa-----CAGGCGCGCG-CA--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.