miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 28212 0.67 0.515068
Target:  5'- cCGgaGGCCCcGcacgCCGCGCcUGcCGCCg -3'
miRNA:   3'- -GCgaCCGGGaCa---GGCGCGcGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 25961 0.67 0.515068
Target:  5'- gCGCUGGCCg-G-CgGCGCGgGaccugCGCCg -3'
miRNA:   3'- -GCGACCGGgaCaGgCGCGCgCa----GCGG- -5'
5131 5' -63.5 NC_001798.1 + 26310 0.67 0.515068
Target:  5'- cCGCUgcGGCCC-GUCUacguggcgcugGgGCGCGaCGCCg -3'
miRNA:   3'- -GCGA--CCGGGaCAGG-----------CgCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 124151 0.67 0.524314
Target:  5'- gCGgaGG-CCUGUCC-C-UGCGUCGCCc -3'
miRNA:   3'- -GCgaCCgGGACAGGcGcGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 26372 0.67 0.524314
Target:  5'- gCGCgGGCCgCggcgGgaguUCUGCGCGCGggCGCUg -3'
miRNA:   3'- -GCGaCCGG-Ga---C----AGGCGCGCGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 105429 0.67 0.561877
Target:  5'- gCGCUGGgCCUGcagcacugCCGCcCGCucCGCCg -3'
miRNA:   3'- -GCGACCgGGACa-------GGCGcGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 28998 0.67 0.533622
Target:  5'- gCGCcGGCCaa--CCGCGCGC--CGCCg -3'
miRNA:   3'- -GCGaCCGGgacaGGCGCGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 5594 0.67 0.533622
Target:  5'- gGCgaggucGCCCcguugGUCCGCGgGCGgcucCGCCc -3'
miRNA:   3'- gCGac----CGGGa----CAGGCGCgCGCa---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 1836 0.67 0.533622
Target:  5'- gGCgGGCCa-GUCCGCG-GCG-CGCa -3'
miRNA:   3'- gCGaCCGGgaCAGGCGCgCGCaGCGg -5'
5131 5' -63.5 NC_001798.1 + 4108 0.67 0.533622
Target:  5'- gGCUcGGCCCUGggcgggcucggCCGgG-GCGcCGCCc -3'
miRNA:   3'- gCGA-CCGGGACa----------GGCgCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 101774 0.67 0.52803
Target:  5'- gCGCUgcuggcguuaacuaaGGCCCggccUCCGCGC-CGggCGCCu -3'
miRNA:   3'- -GCGA---------------CCGGGac--AGGCGCGcGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 118782 0.67 0.524314
Target:  5'- aCGCgGGUgCUGcCCaCGCGaauCGUCGCCu -3'
miRNA:   3'- -GCGaCCGgGACaGGcGCGC---GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 42341 0.67 0.533622
Target:  5'- gCGCaGGCUgUGgCCGUGgGCGUacaCGCCc -3'
miRNA:   3'- -GCGaCCGGgACaGGCGCgCGCA---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 65694 0.66 0.619409
Target:  5'- gCGC-GuGCUCUGUuuGuUGUGCGcCGCCa -3'
miRNA:   3'- -GCGaC-CGGGACAggC-GCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 26458 0.66 0.609763
Target:  5'- aCGCgGGCCCgcccCCGCagauacgcuGgGCGUCgGCCg -3'
miRNA:   3'- -GCGaCCGGGaca-GGCG---------CgCGCAG-CGG- -5'
5131 5' -63.5 NC_001798.1 + 5725 0.66 0.609763
Target:  5'- gCGCUGgcGCCCUGcCCGgGgccCGCGUCaucCCg -3'
miRNA:   3'- -GCGAC--CGGGACaGGCgC---GCGCAGc--GG- -5'
5131 5' -63.5 NC_001798.1 + 16198 0.66 0.580939
Target:  5'- aCGCacgGGCCgCccUCCGCaCGCGcCGCCu -3'
miRNA:   3'- -GCGa--CCGG-GacAGGCGcGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 108863 0.66 0.580939
Target:  5'- gGCUGGC---GUUCGgGUGCGaCGCCg -3'
miRNA:   3'- gCGACCGggaCAGGCgCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 69452 0.66 0.580939
Target:  5'- uGggGGCCCUGUcccccaaaagcaCCGgGC-CGUCGCg -3'
miRNA:   3'- gCgaCCGGGACA------------GGCgCGcGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 25664 0.66 0.580939
Target:  5'- uGCUggcGGCCCUGggcaaccggcUCUGCGgGCc-CGCCa -3'
miRNA:   3'- gCGA---CCGGGAC----------AGGCGCgCGcaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.