miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 117654 0.67 0.515068
Target:  5'- uCGCcGGCCCUGcaacCCGCGgggaCGCG-CgGCCg -3'
miRNA:   3'- -GCGaCCGGGACa---GGCGC----GCGCaG-CGG- -5'
5131 5' -63.5 NC_001798.1 + 75852 0.67 0.518758
Target:  5'- gCGCUGGCCCaGUuuGCccggggcgaagagauGCGgGUCGa- -3'
miRNA:   3'- -GCGACCGGGaCAggCG---------------CGCgCAGCgg -5'
5131 5' -63.5 NC_001798.1 + 88795 0.67 0.524314
Target:  5'- aGCUGaucgaacuccGCCCagcgcgcGUCacguaCGCGCGCGUCGCg -3'
miRNA:   3'- gCGAC----------CGGGa------CAG-----GCGCGCGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 124151 0.67 0.524314
Target:  5'- gCGgaGG-CCUGUCC-C-UGCGUCGCCc -3'
miRNA:   3'- -GCgaCCgGGACAGGcGcGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 118782 0.67 0.524314
Target:  5'- aCGCgGGUgCUGcCCaCGCGaauCGUCGCCu -3'
miRNA:   3'- -GCGaCCGgGACaGGcGCGC---GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 26372 0.67 0.524314
Target:  5'- gCGCgGGCCgCggcgGgaguUCUGCGCGCGggCGCUg -3'
miRNA:   3'- -GCGaCCGG-Ga---C----AGGCGCGCGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 71967 0.67 0.524314
Target:  5'- uGCUGGCCCUGguggUCGgggaCGCGCugaggGCCa -3'
miRNA:   3'- gCGACCGGGACa---GGC----GCGCGcag--CGG- -5'
5131 5' -63.5 NC_001798.1 + 101774 0.67 0.52803
Target:  5'- gCGCUgcuggcguuaacuaaGGCCCggccUCCGCGC-CGggCGCCu -3'
miRNA:   3'- -GCGA---------------CCGGGac--AGGCGCGcGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 103043 0.67 0.533622
Target:  5'- gGC-GGCCUcGcgUCGCacccccucGCGCGUCGCCg -3'
miRNA:   3'- gCGaCCGGGaCa-GGCG--------CGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 52366 0.67 0.533622
Target:  5'- gCGCUGGgCgacaCCGCgGCGCGcCGCCu -3'
miRNA:   3'- -GCGACCgGgacaGGCG-CGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 122472 0.67 0.533622
Target:  5'- cCGC-GGCCCaGaCgGCGCugcuGCGUCGCUu -3'
miRNA:   3'- -GCGaCCGGGaCaGgCGCG----CGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 42341 0.67 0.533622
Target:  5'- gCGCaGGCUgUGgCCGUGgGCGUacaCGCCc -3'
miRNA:   3'- -GCGaCCGGgACaGGCGCgCGCA---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 5594 0.67 0.533622
Target:  5'- gGCgaggucGCCCcguugGUCCGCGgGCGgcucCGCCc -3'
miRNA:   3'- gCGac----CGGGa----CAGGCGCgCGCa---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 4108 0.67 0.533622
Target:  5'- gGCUcGGCCCUGggcgggcucggCCGgG-GCGcCGCCc -3'
miRNA:   3'- gCGA-CCGGGACa----------GGCgCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 1836 0.67 0.533622
Target:  5'- gGCgGGCCa-GUCCGCG-GCG-CGCa -3'
miRNA:   3'- gCGaCCGGgaCAGGCGCgCGCaGCGg -5'
5131 5' -63.5 NC_001798.1 + 28998 0.67 0.533622
Target:  5'- gCGCcGGCCaa--CCGCGCGC--CGCCg -3'
miRNA:   3'- -GCGaCCGGgacaGGCGCGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 118989 0.67 0.542988
Target:  5'- aCGCcccUGGCCCgcgagauagUCGCGCGgcugGUCGCCc -3'
miRNA:   3'- -GCG---ACCGGGaca------GGCGCGCg---CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 137943 0.67 0.542988
Target:  5'- gGCc-GCCCgGUCCGcCGCGCGcUGCUc -3'
miRNA:   3'- gCGacCGGGaCAGGC-GCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 74855 0.67 0.543928
Target:  5'- uGCgGGUCCUGgaggugggggcagugCCG-GUGgGUCGCCa -3'
miRNA:   3'- gCGaCCGGGACa--------------GGCgCGCgCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 153220 0.67 0.54675
Target:  5'- cCGCccgacGGCCCggGcCCGCggcggcggaggacccGCGCGcCGCCg -3'
miRNA:   3'- -GCGa----CCGGGa-CaGGCG---------------CGCGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.