miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 85255 0.68 0.461129
Target:  5'- cCGC-GGCCgCgcgGggCCGCGCGCGagGCUu -3'
miRNA:   3'- -GCGaCCGG-Ga--Ca-GGCGCGCGCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 85292 0.69 0.418549
Target:  5'- gGCgggGGCCgggGUCCGCcCGCGgccCGCCc -3'
miRNA:   3'- gCGa--CCGGga-CAGGCGcGCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 85596 0.66 0.619409
Target:  5'- uGUcGGCuCCU--UCGCGCGCuUCGCCc -3'
miRNA:   3'- gCGaCCG-GGAcaGGCGCGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 86724 0.74 0.228948
Target:  5'- gCGCUGGCCacauuUGUCCGCGaggccgGCG-CGCUg -3'
miRNA:   3'- -GCGACCGGg----ACAGGCGCg-----CGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 86956 0.66 0.580939
Target:  5'- gGCUGgaGCUCUGcCUGCacgaGCGCcGUCGCUa -3'
miRNA:   3'- gCGAC--CGGGACaGGCG----CGCG-CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 87199 0.67 0.561877
Target:  5'- gGCUGGCCaCcGUCaGC-CGCGagGCCc -3'
miRNA:   3'- gCGACCGG-GaCAGgCGcGCGCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 87753 0.77 0.14606
Target:  5'- cCGC-GGCCCUGagCCGCGCGgccaCGUCGUCc -3'
miRNA:   3'- -GCGaCCGGGACa-GGCGCGC----GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 88795 0.67 0.524314
Target:  5'- aGCUGaucgaacuccGCCCagcgcgcGUCacguaCGCGCGCGUCGCg -3'
miRNA:   3'- gCGAC----------CGGGa------CAG-----GCGCGCGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 89301 0.72 0.268345
Target:  5'- uGCcGGCCCccgGUCuCGCGCGCGaccuccUCGCg -3'
miRNA:   3'- gCGaCCGGGa--CAG-GCGCGCGC------AGCGg -5'
5131 5' -63.5 NC_001798.1 + 92305 0.71 0.336697
Target:  5'- uGCUGucGCUaCUGUCgGCGCGCagcggcgacgcggacGUCGCCg -3'
miRNA:   3'- gCGAC--CGG-GACAGgCGCGCG---------------CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 93759 0.68 0.505889
Target:  5'- uGCgGGCCCgccaccccaaGUUCGCGaGCGcCGCCc -3'
miRNA:   3'- gCGaCCGGGa---------CAGGCGCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 95107 0.68 0.487747
Target:  5'- uGCUgcGGCCCgUGauggCCGCGCGCccgaugGUCGUg -3'
miRNA:   3'- gCGA--CCGGG-ACa---GGCGCGCG------CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 95586 0.66 0.600132
Target:  5'- gCGgaGGCCCUGgucagCCaGCuCGgCGcCGCCg -3'
miRNA:   3'- -GCgaCCGGGACa----GG-CGcGC-GCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 96070 0.7 0.376896
Target:  5'- uGUcaggGGCCCgccgccgcaucaGUCCGCGCGgGgcgCGCCu -3'
miRNA:   3'- gCGa---CCGGGa-----------CAGGCGCGCgCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 97237 0.68 0.464634
Target:  5'- aGCUGGCgCUGUUCGgGCgGCGggcggagcacuucgaUCGCg -3'
miRNA:   3'- gCGACCGgGACAGGCgCG-CGC---------------AGCGg -5'
5131 5' -63.5 NC_001798.1 + 98556 0.66 0.586685
Target:  5'- gCGCUGGUCgUGggggcgcugguggCCGCGgugGCGUCGgCg -3'
miRNA:   3'- -GCGACCGGgACa------------GGCGCg--CGCAGCgG- -5'
5131 5' -63.5 NC_001798.1 + 98612 0.66 0.590522
Target:  5'- gGC-GGCCCc--CCGCGCcucgggcgGCGUgGCCg -3'
miRNA:   3'- gCGaCCGGGacaGGCGCG--------CGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 100864 0.66 0.590522
Target:  5'- uGCUGGUCCUGgCCG-GCcugGUCGCg -3'
miRNA:   3'- gCGACCGGGACaGGCgCGcg-CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 101774 0.67 0.52803
Target:  5'- gCGCUgcuggcguuaacuaaGGCCCggccUCCGCGC-CGggCGCCu -3'
miRNA:   3'- -GCGA---------------CCGGGac--AGGCGCGcGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 102184 0.7 0.355655
Target:  5'- uCGUggGGCCCggaagCCugGCGCGCGgcgCGCCg -3'
miRNA:   3'- -GCGa-CCGGGaca--GG--CGCGCGCa--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.