miRNA display CGI


Results 121 - 140 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 118782 0.67 0.524314
Target:  5'- aCGCgGGUgCUGcCCaCGCGaauCGUCGCCu -3'
miRNA:   3'- -GCGaCCGgGACaGGcGCGC---GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 118989 0.67 0.542988
Target:  5'- aCGCcccUGGCCCgcgagauagUCGCGCGgcugGUCGCCc -3'
miRNA:   3'- -GCG---ACCGGGaca------GGCGCGCg---CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 121259 0.68 0.461129
Target:  5'- gGCgggGGUCCcgcUGUCCGCccucguGCGCGgcCGCCc -3'
miRNA:   3'- gCGa--CCGGG---ACAGGCG------CGCGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 121480 0.67 0.561877
Target:  5'- gGCUGuucgucuCCCUGccggUCGCGUGCGaCGCCc -3'
miRNA:   3'- gCGACc------GGGACa---GGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 121963 0.68 0.496781
Target:  5'- cCGCca-CCCgGUCCGCGCGCGcC-CCa -3'
miRNA:   3'- -GCGaccGGGaCAGGCGCGCGCaGcGG- -5'
5131 5' -63.5 NC_001798.1 + 122088 0.68 0.469918
Target:  5'- uGCUGGCgggCCUGgagCCGCccggcgggggGCGCuUUGCCa -3'
miRNA:   3'- gCGACCG---GGACa--GGCG----------CGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 122423 0.71 0.341006
Target:  5'- aCGgaGGCCUgugCCGCcgaGCGCGUCGUg -3'
miRNA:   3'- -GCgaCCGGGacaGGCG---CGCGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 122472 0.67 0.533622
Target:  5'- cCGC-GGCCCaGaCgGCGCugcuGCGUCGCUu -3'
miRNA:   3'- -GCGaCCGGGaCaGgCGCG----CGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 123234 0.68 0.487747
Target:  5'- gGCUacgggacccGGCCUUGUCCGCuGaCGCGU-GCUu -3'
miRNA:   3'- gCGA---------CCGGGACAGGCG-C-GCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 123311 0.7 0.378446
Target:  5'- gCGCUGGCCCc-UCUGCuuuugGUGCGUCuCCg -3'
miRNA:   3'- -GCGACCGGGacAGGCG-----CGCGCAGcGG- -5'
5131 5' -63.5 NC_001798.1 + 123455 0.66 0.606872
Target:  5'- gCGCgcccccgacccggGGCCCgaagccgaccucgUCGCGCGCaUCGCCa -3'
miRNA:   3'- -GCGa------------CCGGGaca----------GGCGCGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 124151 0.67 0.524314
Target:  5'- gCGgaGG-CCUGUCC-C-UGCGUCGCCc -3'
miRNA:   3'- -GCgaCCgGGACAGGcGcGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 124424 0.68 0.478792
Target:  5'- aGCUGcCCCgcgGUCgCGCGgGCcGUgGCCa -3'
miRNA:   3'- gCGACcGGGa--CAG-GCGCgCG-CAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 128291 0.66 0.619409
Target:  5'- -uCUGGCgCCUGacgcgCCGCGCcccccCGUcCGCCg -3'
miRNA:   3'- gcGACCG-GGACa----GGCGCGc----GCA-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 132133 0.66 0.580939
Target:  5'- gGC-GGCCCUGcgCCgccgggggccgGCGgGCGgggCGCCc -3'
miRNA:   3'- gCGaCCGGGACa-GG-----------CGCgCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 134431 1.11 0.00049
Target:  5'- cCGCUGGCCCUGUCCGCGCGCGUCGCCg -3'
miRNA:   3'- -GCGACCGGGACAGGCGCGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 134895 0.68 0.469918
Target:  5'- gGCUGGCCCacGUuuaCCGUGC-CGgcCGCCg -3'
miRNA:   3'- gCGACCGGGa-CA---GGCGCGcGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 135322 0.69 0.418549
Target:  5'- uGCUGGagcgCCUGgugccggaCGCGUGCGaCGCCu -3'
miRNA:   3'- gCGACCg---GGACag------GCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 135533 0.76 0.153297
Target:  5'- cCGCcgGGCCCUcgaggcGUCCGUGCGCGcCGUa -3'
miRNA:   3'- -GCGa-CCGGGA------CAGGCGCGCGCaGCGg -5'
5131 5' -63.5 NC_001798.1 + 137943 0.67 0.542988
Target:  5'- gGCc-GCCCgGUCCGcCGCGCGcUGCUc -3'
miRNA:   3'- gCGacCGGGaCAGGC-GCGCGCaGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.