miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 78566 0.77 0.14606
Target:  5'- gGgaGGCgCUGgCCGCGCGCGagCGCCg -3'
miRNA:   3'- gCgaCCGgGACaGGCGCGCGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 77355 0.75 0.172829
Target:  5'- gGCUGGCCCUGgagGCGCGgGggGCCa -3'
miRNA:   3'- gCGACCGGGACaggCGCGCgCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 77253 0.68 0.452427
Target:  5'- aCGCggugucGGCCCUGggcgcggCCGCcCGCGacccggccUCGCCc -3'
miRNA:   3'- -GCGa-----CCGGGACa------GGCGcGCGC--------AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 75852 0.67 0.518758
Target:  5'- gCGCUGGCCCaGUuuGCccggggcgaagagauGCGgGUCGa- -3'
miRNA:   3'- -GCGACCGGGaCAggCG---------------CGCgCAGCgg -5'
5131 5' -63.5 NC_001798.1 + 74855 0.67 0.543928
Target:  5'- uGCgGGUCCUGgaggugggggcagugCCG-GUGgGUCGCCa -3'
miRNA:   3'- gCGaCCGGGACa--------------GGCgCGCgCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 74579 0.67 0.552408
Target:  5'- gGCUcgGGCCCggucGUCCcCGCGCuccccgCGCCc -3'
miRNA:   3'- gCGA--CCGGGa---CAGGcGCGCGca----GCGG- -5'
5131 5' -63.5 NC_001798.1 + 72928 0.7 0.394176
Target:  5'- gCGCUGGUCgUG---GCGCGCuUCGCCa -3'
miRNA:   3'- -GCGACCGGgACaggCGCGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 71967 0.67 0.524314
Target:  5'- uGCUGGCCCUGguggUCGgggaCGCGCugaggGCCa -3'
miRNA:   3'- gCGACCGGGACa---GGC----GCGCGcag--CGG- -5'
5131 5' -63.5 NC_001798.1 + 71084 0.72 0.299715
Target:  5'- cCGCgucaGCCCgcgGUCgGCGUGCG-CGCCc -3'
miRNA:   3'- -GCGac--CGGGa--CAGgCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 70578 0.78 0.108838
Target:  5'- gGC-GGCCCUGgggCCgGUGCGCGUcCGCCa -3'
miRNA:   3'- gCGaCCGGGACa--GG-CGCGCGCA-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 70045 0.8 0.091433
Target:  5'- cCGUuugGGCCCgcgGucUCCGCGcCGCGUCGCCg -3'
miRNA:   3'- -GCGa--CCGGGa--C--AGGCGC-GCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 69452 0.66 0.580939
Target:  5'- uGggGGCCCUGUcccccaaaagcaCCGgGC-CGUCGCg -3'
miRNA:   3'- gCgaCCGGGACA------------GGCgCGcGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 68222 0.69 0.443816
Target:  5'- gCGCaGGCCCgccaccCCGC-CGCG-CGCCa -3'
miRNA:   3'- -GCGaCCGGGaca---GGCGcGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 65694 0.66 0.619409
Target:  5'- gCGC-GuGCUCUGUuuGuUGUGCGcCGCCa -3'
miRNA:   3'- -GCGaC-CGGGACAggC-GCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 58319 0.68 0.461129
Target:  5'- aGCUccgucaGGCCCg--CCGC-CGCGUgGCCc -3'
miRNA:   3'- gCGA------CCGGGacaGGCGcGCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 55177 0.68 0.461129
Target:  5'- gCGCUGGCCaacgacgGcCCGaCGaaCGUCGCCg -3'
miRNA:   3'- -GCGACCGGga-----CaGGC-GCgcGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 52874 0.68 0.461129
Target:  5'- uGCUggGGCCgCggGUCCGCGCGUGgacaucauggCGCa -3'
miRNA:   3'- gCGA--CCGG-Ga-CAGGCGCGCGCa---------GCGg -5'
5131 5' -63.5 NC_001798.1 + 52568 0.74 0.201992
Target:  5'- uGCUGGgCCUGgccgacacgguggUCGCGUGCGUgGCCc -3'
miRNA:   3'- gCGACCgGGACa------------GGCGCGCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 52366 0.67 0.533622
Target:  5'- gCGCUGGgCgacaCCGCgGCGCGcCGCCu -3'
miRNA:   3'- -GCGACCgGgacaGGCG-CGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 52034 0.71 0.308992
Target:  5'- -aCUGGCCCgggGUgCGCGCGCuccuggggcgcgacuGUCGCg -3'
miRNA:   3'- gcGACCGGGa--CAgGCGCGCG---------------CAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.