miRNA display CGI


Results 121 - 140 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 26310 0.67 0.515068
Target:  5'- cCGCUgcGGCCC-GUCUacguggcgcugGgGCGCGaCGCCg -3'
miRNA:   3'- -GCGA--CCGGGaCAGG-----------CgCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 26142 0.74 0.218626
Target:  5'- aCGCUGguGCCCaUGUCCcCGCGCGaguacCGCCg -3'
miRNA:   3'- -GCGAC--CGGG-ACAGGcGCGCGCa----GCGG- -5'
5131 5' -63.5 NC_001798.1 + 26093 0.66 0.619409
Target:  5'- cCGCggGGCCaacgugcgGUaCCGCGUGCGcacgCGCUu -3'
miRNA:   3'- -GCGa-CCGGga------CA-GGCGCGCGCa---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 25996 0.69 0.430232
Target:  5'- uGCUGGCCUccggccgcgUGUucgggccgggggucuUCGCGCGCGUggagGCCg -3'
miRNA:   3'- gCGACCGGG---------ACA---------------GGCGCGCGCAg---CGG- -5'
5131 5' -63.5 NC_001798.1 + 25961 0.67 0.515068
Target:  5'- gCGCUGGCCg-G-CgGCGCGgGaccugCGCCg -3'
miRNA:   3'- -GCGACCGGgaCaGgCGCGCgCa----GCGG- -5'
5131 5' -63.5 NC_001798.1 + 25664 0.66 0.580939
Target:  5'- uGCUggcGGCCCUGggcaaccggcUCUGCGgGCc-CGCCa -3'
miRNA:   3'- gCGA---CCGGGAC----------AGGCGCgCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 25488 0.69 0.426874
Target:  5'- gCGCgccucgGGCCCgcugcgCCGCGCGgCGgccuggaugCGCCa -3'
miRNA:   3'- -GCGa-----CCGGGaca---GGCGCGC-GCa--------GCGG- -5'
5131 5' -63.5 NC_001798.1 + 25417 0.79 0.098543
Target:  5'- gCGCUGGCCUcgcUGgCCGCGCGCuG-CGCCg -3'
miRNA:   3'- -GCGACCGGG---ACaGGCGCGCG-CaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 24933 0.67 0.515068
Target:  5'- uGCUGaGCUCcG-CCGC-CGCGcCGCCg -3'
miRNA:   3'- gCGAC-CGGGaCaGGCGcGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 24858 0.67 0.515068
Target:  5'- cCGCcgUGGCCg---CCGUGCGCGccgugagccuggUCGCCg -3'
miRNA:   3'- -GCG--ACCGGgacaGGCGCGCGC------------AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 24803 0.69 0.407874
Target:  5'- gCGCUGGUgCUGaUgCGCcugcgcggggaccuGCGCGUgGCCg -3'
miRNA:   3'- -GCGACCGgGAC-AgGCG--------------CGCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 24026 0.66 0.571389
Target:  5'- gGgUGGCUCcagaacCCGCGCGUGgCGCCc -3'
miRNA:   3'- gCgACCGGGaca---GGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 18596 0.7 0.386258
Target:  5'- aGCa-GCCCccccggGUCCGCGCGCcGUccCGCCg -3'
miRNA:   3'- gCGacCGGGa-----CAGGCGCGCG-CA--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 17139 0.66 0.580939
Target:  5'- gCGCggugaGGCgCgauUCCGCGUGCGUCGg- -3'
miRNA:   3'- -GCGa----CCGgGac-AGGCGCGCGCAGCgg -5'
5131 5' -63.5 NC_001798.1 + 16198 0.66 0.580939
Target:  5'- aCGCacgGGCCgCccUCCGCaCGCGcCGCCu -3'
miRNA:   3'- -GCGa--CCGG-GacAGGCGcGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 15874 0.67 0.561877
Target:  5'- ---gGGgUCUGUCCGCaggGCGCGUCGaaaCCg -3'
miRNA:   3'- gcgaCCgGGACAGGCG---CGCGCAGC---GG- -5'
5131 5' -63.5 NC_001798.1 + 15533 0.65 0.628097
Target:  5'- gCGCUGcugguguucguguGCCCgGcCC-CGgGCGUUGCCg -3'
miRNA:   3'- -GCGAC-------------CGGGaCaGGcGCgCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 9189 0.66 0.609763
Target:  5'- gGCgGGUCC---CCGCGUGCGUcCGCg -3'
miRNA:   3'- gCGaCCGGGacaGGCGCGCGCA-GCGg -5'
5131 5' -63.5 NC_001798.1 + 8666 0.66 0.609763
Target:  5'- gGCgauaaccaGCCCgacgcaCCGCGUGCGcCGCCg -3'
miRNA:   3'- gCGac------CGGGaca---GGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 5725 0.66 0.609763
Target:  5'- gCGCUGgcGCCCUGcCCGgGgccCGCGUCaucCCg -3'
miRNA:   3'- -GCGAC--CGGGACaGGCgC---GCGCAGc--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.