miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 153220 0.67 0.54675
Target:  5'- cCGCccgacGGCCCggGcCCGCggcggcggaggacccGCGCGcCGCCg -3'
miRNA:   3'- -GCGa----CCGGGa-CaGGCG---------------CGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 74855 0.67 0.543928
Target:  5'- uGCgGGUCCUGgaggugggggcagugCCG-GUGgGUCGCCa -3'
miRNA:   3'- gCGaCCGGGACa--------------GGCgCGCgCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 137943 0.67 0.542988
Target:  5'- gGCc-GCCCgGUCCGcCGCGCGcUGCUc -3'
miRNA:   3'- gCGacCGGGaCAGGC-GCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 118989 0.67 0.542988
Target:  5'- aCGCcccUGGCCCgcgagauagUCGCGCGgcugGUCGCCc -3'
miRNA:   3'- -GCG---ACCGGGaca------GGCGCGCg---CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 103043 0.67 0.533622
Target:  5'- gGC-GGCCUcGcgUCGCacccccucGCGCGUCGCCg -3'
miRNA:   3'- gCGaCCGGGaCa-GGCG--------CGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 87199 0.67 0.561877
Target:  5'- gGCUGGCCaCcGUCaGC-CGCGagGCCc -3'
miRNA:   3'- gCGACCGG-GaCAGgCGcGCGCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 121480 0.67 0.561877
Target:  5'- gGCUGuucgucuCCCUGccggUCGCGUGCGaCGCCc -3'
miRNA:   3'- gCGACc------GGGACa---GGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 17139 0.66 0.580939
Target:  5'- gCGCggugaGGCgCgauUCCGCGUGCGUCGg- -3'
miRNA:   3'- -GCGa----CCGgGac-AGGCGCGCGCAGCgg -5'
5131 5' -63.5 NC_001798.1 + 86956 0.66 0.580939
Target:  5'- gGCUGgaGCUCUGcCUGCacgaGCGCcGUCGCUa -3'
miRNA:   3'- gCGAC--CGGGACaGGCG----CGCG-CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 27621 0.66 0.580939
Target:  5'- gGCU-GCCCUG-CCGCcCGCc-CGCCg -3'
miRNA:   3'- gCGAcCGGGACaGGCGcGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 110843 0.66 0.580939
Target:  5'- aGaCUGGCCgUG-CUGgGCGCGa-GCCa -3'
miRNA:   3'- gC-GACCGGgACaGGCgCGCGCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 150137 0.66 0.575205
Target:  5'- cCGCggGGCCCgaGUCCGaccCGCGCcucuuccgggggcggGcCGCCg -3'
miRNA:   3'- -GCGa-CCGGGa-CAGGC---GCGCG---------------CaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 143812 0.66 0.571389
Target:  5'- ---aGGCCCgggCgGCGCGCGgccaGCCg -3'
miRNA:   3'- gcgaCCGGGacaGgCGCGCGCag--CGG- -5'
5131 5' -63.5 NC_001798.1 + 24026 0.66 0.571389
Target:  5'- gGgUGGCUCcagaacCCGCGCGUGgCGCCc -3'
miRNA:   3'- gCgACCGGGaca---GGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 114275 0.66 0.571389
Target:  5'- aGCUcGG-CCUGUCCgugGCGUGCGUgUGCa -3'
miRNA:   3'- gCGA-CCgGGACAGG---CGCGCGCA-GCGg -5'
5131 5' -63.5 NC_001798.1 + 116527 0.66 0.570436
Target:  5'- gCGCUGcuGCaCCgcggggGUCCGCuucgaccGCGUGUaCGCCa -3'
miRNA:   3'- -GCGAC--CG-GGa-----CAGGCG-------CGCGCA-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 51141 0.66 0.567579
Target:  5'- gGgaGGCCCgcggucaccccggGUcCCGaCGCGCGUCcgagGCCc -3'
miRNA:   3'- gCgaCCGGGa------------CA-GGC-GCGCGCAG----CGG- -5'
5131 5' -63.5 NC_001798.1 + 110677 0.67 0.561877
Target:  5'- cCGC-GGUCUguuuguuauugUGUCCGcCGUGCGUcCGCUa -3'
miRNA:   3'- -GCGaCCGGG-----------ACAGGC-GCGCGCA-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 15874 0.67 0.561877
Target:  5'- ---gGGgUCUGUCCGCaggGCGCGUCGaaaCCg -3'
miRNA:   3'- gcgaCCgGGACAGGCG---CGCGCAGC---GG- -5'
5131 5' -63.5 NC_001798.1 + 138892 0.67 0.561877
Target:  5'- aGCUGGUCg-GUCCGCuuGgGcCGCCc -3'
miRNA:   3'- gCGACCGGgaCAGGCGcgCgCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.