Results 121 - 140 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5131 | 5' | -63.5 | NC_001798.1 | + | 118782 | 0.67 | 0.524314 |
Target: 5'- aCGCgGGUgCUGcCCaCGCGaauCGUCGCCu -3' miRNA: 3'- -GCGaCCGgGACaGGcGCGC---GCAGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 26372 | 0.67 | 0.524314 |
Target: 5'- gCGCgGGCCgCggcgGgaguUCUGCGCGCGggCGCUg -3' miRNA: 3'- -GCGaCCGG-Ga---C----AGGCGCGCGCa-GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 4048 | 0.67 | 0.552408 |
Target: 5'- gCGCgGGCCCgg-CgGCGCuccaggcggcccGCGgUCGCCg -3' miRNA: 3'- -GCGaCCGGGacaGgCGCG------------CGC-AGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 74579 | 0.67 | 0.552408 |
Target: 5'- gGCUcgGGCCCggucGUCCcCGCGCuccccgCGCCc -3' miRNA: 3'- gCGA--CCGGGa---CAGGcGCGCGca----GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 149237 | 0.67 | 0.552408 |
Target: 5'- cCG-UGGCCCg---CGgGgGCGUCGCCg -3' miRNA: 3'- -GCgACCGGGacagGCgCgCGCAGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 143812 | 0.66 | 0.571389 |
Target: 5'- ---aGGCCCgggCgGCGCGCGgccaGCCg -3' miRNA: 3'- gcgaCCGGGacaGgCGCGCGCag--CGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 24026 | 0.66 | 0.571389 |
Target: 5'- gGgUGGCUCcagaacCCGCGCGUGgCGCCc -3' miRNA: 3'- gCgACCGGGaca---GGCGCGCGCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 114275 | 0.66 | 0.571389 |
Target: 5'- aGCUcGG-CCUGUCCgugGCGUGCGUgUGCa -3' miRNA: 3'- gCGA-CCgGGACAGG---CGCGCGCA-GCGg -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 116527 | 0.66 | 0.570436 |
Target: 5'- gCGCUGcuGCaCCgcggggGUCCGCuucgaccGCGUGUaCGCCa -3' miRNA: 3'- -GCGAC--CG-GGa-----CAGGCG-------CGCGCA-GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 51141 | 0.66 | 0.567579 |
Target: 5'- gGgaGGCCCgcggucaccccggGUcCCGaCGCGCGUCcgagGCCc -3' miRNA: 3'- gCgaCCGGGa------------CA-GGC-GCGCGCAG----CGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 110677 | 0.67 | 0.561877 |
Target: 5'- cCGC-GGUCUguuuguuauugUGUCCGcCGUGCGUcCGCUa -3' miRNA: 3'- -GCGaCCGGG-----------ACAGGC-GCGCGCA-GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 15874 | 0.67 | 0.561877 |
Target: 5'- ---gGGgUCUGUCCGCaggGCGCGUCGaaaCCg -3' miRNA: 3'- gcgaCCgGGACAGGCG---CGCGCAGC---GG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 138892 | 0.67 | 0.561877 |
Target: 5'- aGCUGGUCg-GUCCGCuuGgGcCGCCc -3' miRNA: 3'- gCGACCGGgaCAGGCGcgCgCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 121480 | 0.67 | 0.561877 |
Target: 5'- gGCUGuucgucuCCCUGccggUCGCGUGCGaCGCCc -3' miRNA: 3'- gCGACc------GGGACa---GGCGCGCGCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 87199 | 0.67 | 0.561877 |
Target: 5'- gGCUGGCCaCcGUCaGC-CGCGagGCCc -3' miRNA: 3'- gCGACCGG-GaCAGgCGcGCGCagCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 42552 | 0.67 | 0.561877 |
Target: 5'- aCGacgGaGUCCgGUUCGCuGgGCGUCGCCg -3' miRNA: 3'- -GCga-C-CGGGaCAGGCG-CgCGCAGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 105429 | 0.67 | 0.561877 |
Target: 5'- gCGCUGGgCCUGcagcacugCCGCcCGCucCGCCg -3' miRNA: 3'- -GCGACCgGGACa-------GGCGcGCGcaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 106482 | 0.67 | 0.560928 |
Target: 5'- gCGC-GGCCCgagGUCCacuucGCauauuaaggugacGCGCGUgGCCu -3' miRNA: 3'- -GCGaCCGGGa--CAGG-----CG-------------CGCGCAgCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 145535 | 0.67 | 0.552408 |
Target: 5'- gCGCgcccccGCCCgg-CCGCcCGCGUCGCg -3' miRNA: 3'- -GCGac----CGGGacaGGCGcGCGCAGCGg -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 30846 | 0.67 | 0.552408 |
Target: 5'- uCGCUGGggggacaCacgGUCCGCGCcCuGUCGCCc -3' miRNA: 3'- -GCGACCg------Gga-CAGGCGCGcG-CAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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