miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 134431 1.11 0.00049
Target:  5'- cCGCUGGCCCUGUCCGCGCGCGUCGCCg -3'
miRNA:   3'- -GCGACCGGGACAGGCGCGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 70045 0.8 0.091433
Target:  5'- cCGUuugGGCCCgcgGucUCCGCGcCGCGUCGCCg -3'
miRNA:   3'- -GCGa--CCGGGa--C--AGGCGC-GCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 47675 0.79 0.093747
Target:  5'- gCGCUGGCCCga--UGCGCGCG-CGCCc -3'
miRNA:   3'- -GCGACCGGGacagGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 25417 0.79 0.098543
Target:  5'- gCGCUGGCCUcgcUGgCCGCGCGCuG-CGCCg -3'
miRNA:   3'- -GCGACCGGG---ACaGGCGCGCG-CaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 70578 0.78 0.108838
Target:  5'- gGC-GGCCCUGgggCCgGUGCGCGUcCGCCa -3'
miRNA:   3'- gCGaCCGGGACa--GG-CGCGCGCA-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 78566 0.77 0.14606
Target:  5'- gGgaGGCgCUGgCCGCGCGCGagCGCCg -3'
miRNA:   3'- gCgaCCGgGACaGGCGCGCGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 87753 0.77 0.14606
Target:  5'- cCGC-GGCCCUGagCCGCGCGgccaCGUCGUCc -3'
miRNA:   3'- -GCGaCCGGGACa-GGCGCGC----GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 135533 0.76 0.153297
Target:  5'- cCGCcgGGCCCUcgaggcGUCCGUGCGCGcCGUa -3'
miRNA:   3'- -GCGa-CCGGGA------CAGGCGCGCGCaGCGg -5'
5131 5' -63.5 NC_001798.1 + 77355 0.75 0.172829
Target:  5'- gGCUGGCCCUGgagGCGCGgGggGCCa -3'
miRNA:   3'- gCGACCGGGACaggCGCGCgCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 3128 0.75 0.181246
Target:  5'- aCGC-GGCCCgccUCCGCGCGCcgGcCGCCg -3'
miRNA:   3'- -GCGaCCGGGac-AGGCGCGCG--CaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 150251 0.75 0.194552
Target:  5'- cCGCgcccGGCCCUcccgacCCGCGCGCGUCGgUCg -3'
miRNA:   3'- -GCGa---CCGGGAca----GGCGCGCGCAGC-GG- -5'
5131 5' -63.5 NC_001798.1 + 1255 0.75 0.194552
Target:  5'- gGCgGGCCCgcGUCCGCGU-CGUCGCg -3'
miRNA:   3'- gCGaCCGGGa-CAGGCGCGcGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 79985 0.74 0.199173
Target:  5'- cCGCcgGGCCCccggggGUCCcaGCGCcacuGCGUCGCCu -3'
miRNA:   3'- -GCGa-CCGGGa-----CAGG--CGCG----CGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 52568 0.74 0.201992
Target:  5'- uGCUGGgCCUGgccgacacgguggUCGCGUGCGUgGCCc -3'
miRNA:   3'- gCGACCgGGACa------------GGCGCGCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 26142 0.74 0.218626
Target:  5'- aCGCUGguGCCCaUGUCCcCGCGCGaguacCGCCg -3'
miRNA:   3'- -GCGAC--CGGG-ACAGGcGCGCGCa----GCGG- -5'
5131 5' -63.5 NC_001798.1 + 111140 0.74 0.223736
Target:  5'- gGC-GGCgCUGUCgGCccGCGCGUCGCUc -3'
miRNA:   3'- gCGaCCGgGACAGgCG--CGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 32048 0.74 0.223736
Target:  5'- cCGCUcGCCCcggcGUCCGCGgGCGccgCGCCc -3'
miRNA:   3'- -GCGAcCGGGa---CAGGCGCgCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 86724 0.74 0.228948
Target:  5'- gCGCUGGCCacauuUGUCCGCGaggccgGCG-CGCUg -3'
miRNA:   3'- -GCGACCGGg----ACAGGCGCg-----CGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 50910 0.73 0.250826
Target:  5'- gGCcuccGGCCaccaUGUCCGUGCGCGggcaUGCCg -3'
miRNA:   3'- gCGa---CCGGg---ACAGGCGCGCGCa---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 89301 0.72 0.268345
Target:  5'- uGCcGGCCCccgGUCuCGCGCGCGaccuccUCGCg -3'
miRNA:   3'- gCGaCCGGGa--CAG-GCGCGCGC------AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.