miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 136 0.68 0.478792
Target:  5'- aGCcGGCCgCUcccCCGCGgGCGcCGCCc -3'
miRNA:   3'- gCGaCCGG-GAca-GGCGCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 1255 0.75 0.194552
Target:  5'- gGCgGGCCCgcGUCCGCGU-CGUCGCg -3'
miRNA:   3'- gCGaCCGGGa-CAGGCGCGcGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 1358 0.68 0.469918
Target:  5'- cCGCcGGgCCg--CCGCGCacgGCGUCGCg -3'
miRNA:   3'- -GCGaCCgGGacaGGCGCG---CGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 1836 0.67 0.533622
Target:  5'- gGCgGGCCa-GUCCGCG-GCG-CGCa -3'
miRNA:   3'- gCGaCCGGgaCAGGCGCgCGCaGCGg -5'
5131 5' -63.5 NC_001798.1 + 2990 0.68 0.505889
Target:  5'- gGCcGGCCCgcgGgccCCGgGCGCGggggCGCg -3'
miRNA:   3'- gCGaCCGGGa--Ca--GGCgCGCGCa---GCGg -5'
5131 5' -63.5 NC_001798.1 + 3128 0.75 0.181246
Target:  5'- aCGC-GGCCCgccUCCGCGCGCcgGcCGCCg -3'
miRNA:   3'- -GCGaCCGGGac-AGGCGCGCG--CaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 3334 0.68 0.469918
Target:  5'- gGCgGGCUUc--CCGCGgGCGUCGUCg -3'
miRNA:   3'- gCGaCCGGGacaGGCGCgCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 3456 0.68 0.469918
Target:  5'- gGCUGgucagcaggaaGCCCU-UCUGCGCGCgGUCGUa -3'
miRNA:   3'- gCGAC-----------CGGGAcAGGCGCGCG-CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 3730 0.7 0.378446
Target:  5'- cCGCgugaucagGGCguaCUG-CUGCGcCGCGUCGCCc -3'
miRNA:   3'- -GCGa-------CCGg--GACaGGCGC-GCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 4048 0.67 0.552408
Target:  5'- gCGCgGGCCCgg-CgGCGCuccaggcggcccGCGgUCGCCg -3'
miRNA:   3'- -GCGaCCGGGacaGgCGCG------------CGC-AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 4108 0.67 0.533622
Target:  5'- gGCUcGGCCCUGggcgggcucggCCGgG-GCGcCGCCc -3'
miRNA:   3'- gCGA-CCGGGACa----------GGCgCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 4978 0.68 0.452427
Target:  5'- cCGC-GGCCCUG--CGCGuCGuCGUCGUCu -3'
miRNA:   3'- -GCGaCCGGGACagGCGC-GC-GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 5393 0.66 0.600132
Target:  5'- gGCggcGGCCCguugGU-CGCGC-CGcCGCCg -3'
miRNA:   3'- gCGa--CCGGGa---CAgGCGCGcGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 5594 0.67 0.533622
Target:  5'- gGCgaggucGCCCcguugGUCCGCGgGCGgcucCGCCc -3'
miRNA:   3'- gCGac----CGGGa----CAGGCGCgCGCa---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 5725 0.66 0.609763
Target:  5'- gCGCUGgcGCCCUGcCCGgGgccCGCGUCaucCCg -3'
miRNA:   3'- -GCGAC--CGGGACaGGCgC---GCGCAGc--GG- -5'
5131 5' -63.5 NC_001798.1 + 8666 0.66 0.609763
Target:  5'- gGCgauaaccaGCCCgacgcaCCGCGUGCGcCGCCg -3'
miRNA:   3'- gCGac------CGGGaca---GGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 9189 0.66 0.609763
Target:  5'- gGCgGGUCC---CCGCGUGCGUcCGCg -3'
miRNA:   3'- gCGaCCGGGacaGGCGCGCGCA-GCGg -5'
5131 5' -63.5 NC_001798.1 + 15533 0.65 0.628097
Target:  5'- gCGCUGcugguguucguguGCCCgGcCC-CGgGCGUUGCCg -3'
miRNA:   3'- -GCGAC-------------CGGGaCaGGcGCgCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 15874 0.67 0.561877
Target:  5'- ---gGGgUCUGUCCGCaggGCGCGUCGaaaCCg -3'
miRNA:   3'- gcgaCCgGGACAGGCG---CGCGCAGC---GG- -5'
5131 5' -63.5 NC_001798.1 + 16198 0.66 0.580939
Target:  5'- aCGCacgGGCCgCccUCCGCaCGCGcCGCCu -3'
miRNA:   3'- -GCGa--CCGG-GacAGGCGcGCGCaGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.