miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 153022 0.66 0.600132
Target:  5'- gGCggaguccgGGCCCgcgcggCgGCGCGCGguuggccggCGCCg -3'
miRNA:   3'- gCGa-------CCGGGaca---GgCGCGCGCa--------GCGG- -5'
5131 5' -63.5 NC_001798.1 + 5393 0.66 0.600132
Target:  5'- gGCggcGGCCCguugGU-CGCGC-CGcCGCCg -3'
miRNA:   3'- gCGa--CCGGGa---CAgGCGCGcGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 98612 0.66 0.590522
Target:  5'- gGC-GGCCCc--CCGCGCcucgggcgGCGUgGCCg -3'
miRNA:   3'- gCGaCCGGGacaGGCGCG--------CGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 100864 0.66 0.590522
Target:  5'- uGCUGGUCCUGgCCG-GCcugGUCGCg -3'
miRNA:   3'- gCGACCGGGACaGGCgCGcg-CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 98556 0.66 0.586685
Target:  5'- gCGCUGGUCgUGggggcgcugguggCCGCGgugGCGUCGgCg -3'
miRNA:   3'- -GCGACCGGgACa------------GGCGCg--CGCAGCgG- -5'
5131 5' -63.5 NC_001798.1 + 17139 0.66 0.580939
Target:  5'- gCGCggugaGGCgCgauUCCGCGUGCGUCGg- -3'
miRNA:   3'- -GCGa----CCGgGac-AGGCGCGCGCAGCgg -5'
5131 5' -63.5 NC_001798.1 + 86956 0.66 0.580939
Target:  5'- gGCUGgaGCUCUGcCUGCacgaGCGCcGUCGCUa -3'
miRNA:   3'- gCGAC--CGGGACaGGCG----CGCG-CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 27621 0.66 0.580939
Target:  5'- gGCU-GCCCUG-CCGCcCGCc-CGCCg -3'
miRNA:   3'- gCGAcCGGGACaGGCGcGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 110843 0.66 0.580939
Target:  5'- aGaCUGGCCgUG-CUGgGCGCGa-GCCa -3'
miRNA:   3'- gC-GACCGGgACaGGCgCGCGCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 25664 0.66 0.580939
Target:  5'- uGCUggcGGCCCUGggcaaccggcUCUGCGgGCc-CGCCa -3'
miRNA:   3'- gCGA---CCGGGAC----------AGGCGCgCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 69452 0.66 0.580939
Target:  5'- uGggGGCCCUGUcccccaaaagcaCCGgGC-CGUCGCg -3'
miRNA:   3'- gCgaCCGGGACA------------GGCgCGcGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 108863 0.66 0.580939
Target:  5'- gGCUGGC---GUUCGgGUGCGaCGCCg -3'
miRNA:   3'- gCGACCGggaCAGGCgCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 132133 0.66 0.580939
Target:  5'- gGC-GGCCCUGcgCCgccgggggccgGCGgGCGgggCGCCc -3'
miRNA:   3'- gCGaCCGGGACa-GG-----------CGCgCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 16198 0.66 0.580939
Target:  5'- aCGCacgGGCCgCccUCCGCaCGCGcCGCCu -3'
miRNA:   3'- -GCGa--CCGG-GacAGGCGcGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 31579 0.66 0.580939
Target:  5'- cCGC-GcGCCC---CCGCGCGgcCGUCGCCc -3'
miRNA:   3'- -GCGaC-CGGGacaGGCGCGC--GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 150137 0.66 0.575205
Target:  5'- cCGCggGGCCCgaGUCCGaccCGCGCcucuuccgggggcggGcCGCCg -3'
miRNA:   3'- -GCGa-CCGGGa-CAGGC---GCGCG---------------CaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 143812 0.66 0.571389
Target:  5'- ---aGGCCCgggCgGCGCGCGgccaGCCg -3'
miRNA:   3'- gcgaCCGGGacaGgCGCGCGCag--CGG- -5'
5131 5' -63.5 NC_001798.1 + 24026 0.66 0.571389
Target:  5'- gGgUGGCUCcagaacCCGCGCGUGgCGCCc -3'
miRNA:   3'- gCgACCGGGaca---GGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 114275 0.66 0.571389
Target:  5'- aGCUcGG-CCUGUCCgugGCGUGCGUgUGCa -3'
miRNA:   3'- gCGA-CCgGGACAGG---CGCGCGCA-GCGg -5'
5131 5' -63.5 NC_001798.1 + 116527 0.66 0.570436
Target:  5'- gCGCUGcuGCaCCgcggggGUCCGCuucgaccGCGUGUaCGCCa -3'
miRNA:   3'- -GCGAC--CG-GGa-----CAGGCG-------CGCGCA-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.