miRNA display CGI


Results 61 - 80 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 80794 0.67 0.676251
Target:  5'- cGGCggGCcGGACGCCgCcCUGCG-CGACg -3'
miRNA:   3'- -UCGa-CGaCCUGCGG-GuGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 32568 0.67 0.676251
Target:  5'- uGCUGC-GGGCcgcgGCCC-CCGCGUgGAg -3'
miRNA:   3'- uCGACGaCCUG----CGGGuGGCGUAgCUg -5'
5132 3' -59.7 NC_001798.1 + 49403 0.67 0.665247
Target:  5'- gAGCUGC-GGGCGCgggaggagagcuaCCggACCGUGUUGGCa -3'
miRNA:   3'- -UCGACGaCCUGCG-------------GG--UGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 75373 0.66 0.744811
Target:  5'- gGGCUGUUGGA-GCUCugCGuCAUCu-- -3'
miRNA:   3'- -UCGACGACCUgCGGGugGC-GUAGcug -5'
5132 3' -59.7 NC_001798.1 + 23727 0.66 0.744811
Target:  5'- cGGCgggucgaGCUGGACGCCgaCGCgGCcucCGGCg -3'
miRNA:   3'- -UCGa------CGACCUGCGG--GUGgCGua-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 37486 0.66 0.744811
Target:  5'- gAGCUGUaccGGGCccaacgcgcgGCCCGCUguGCGUCGAg -3'
miRNA:   3'- -UCGACGa--CCUG----------CGGGUGG--CGUAGCUg -5'
5132 3' -59.7 NC_001798.1 + 48361 0.66 0.744811
Target:  5'- cGGCcGCccgGGGcCGCCCcgcggggcguGCCGCcgCGACc -3'
miRNA:   3'- -UCGaCGa--CCU-GCGGG----------UGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 117915 0.66 0.744811
Target:  5'- cGCUGcCUGGAgCGUCuCAUCGUggaaacgggAUCGGCg -3'
miRNA:   3'- uCGAC-GACCU-GCGG-GUGGCG---------UAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 66943 0.66 0.754293
Target:  5'- gGGCUGCacGGAguCGUCCgACCGCgaGUCGGa -3'
miRNA:   3'- -UCGACGa-CCU--GCGGG-UGGCG--UAGCUg -5'
5132 3' -59.7 NC_001798.1 + 2248 0.66 0.754293
Target:  5'- aGGCgGC-GGGCGCgCCGCCGgGgggcggggCGGCg -3'
miRNA:   3'- -UCGaCGaCCUGCG-GGUGGCgUa-------GCUG- -5'
5132 3' -59.7 NC_001798.1 + 134752 0.66 0.754293
Target:  5'- cGGC-GCUGGuCGCCCucuuCCgGCAgUGGCa -3'
miRNA:   3'- -UCGaCGACCuGCGGGu---GG-CGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 3947 0.66 0.735232
Target:  5'- uAGCgcGCguagaaGGCGCCggagGCCGCGUCGGCg -3'
miRNA:   3'- -UCGa-CGac----CUGCGGg---UGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 137506 0.66 0.735232
Target:  5'- cGCgUGCUGuACGUCCGCCacgaacaggGCcgCGACg -3'
miRNA:   3'- uCG-ACGACcUGCGGGUGG---------CGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 23849 0.66 0.725567
Target:  5'- cGGCggGCUGGGCGacaGCCGCccCGGCc -3'
miRNA:   3'- -UCGa-CGACCUGCgggUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 27509 0.66 0.735232
Target:  5'- aAGCcGCgcggGGGCGCCCGCgggaagGCAgccccgCGGCg -3'
miRNA:   3'- -UCGaCGa---CCUGCGGGUGg-----CGUa-----GCUG- -5'
5132 3' -59.7 NC_001798.1 + 2501 0.66 0.735232
Target:  5'- cGCcGCgGGGCGCggCgGCCGCggCGGCg -3'
miRNA:   3'- uCGaCGaCCUGCG--GgUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 92985 0.66 0.725567
Target:  5'- uGGCccGCgcGGcCGCCCACCugGCGuUCGACg -3'
miRNA:   3'- -UCGa-CGa-CCuGCGGGUGG--CGU-AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 153873 0.66 0.725567
Target:  5'- gGGggGCUGuuCGCCCACUcuGCGUCGuCg -3'
miRNA:   3'- -UCgaCGACcuGCGGGUGG--CGUAGCuG- -5'
5132 3' -59.7 NC_001798.1 + 109447 0.66 0.734269
Target:  5'- cGGCUGgaGGcGCGCCUcgggcaucuggugGCCGCGauccUCGAg -3'
miRNA:   3'- -UCGACgaCC-UGCGGG-------------UGGCGU----AGCUg -5'
5132 3' -59.7 NC_001798.1 + 41650 0.66 0.732342
Target:  5'- gAGgUGCUGGAgGgagcggaCCGcgagcauggcgugcCCGCAUCGACg -3'
miRNA:   3'- -UCgACGACCUgCg------GGU--------------GGCGUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.