Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5132 | 3' | -59.7 | NC_001798.1 | + | 183 | 0.75 | 0.267924 |
Target: 5'- gGGCUGCcuucccgcGGGCGCCC-CCGCG-CGGCu -3' miRNA: 3'- -UCGACGa-------CCUGCGGGuGGCGUaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 2057 | 0.78 | 0.165127 |
Target: 5'- cAGCagGCaGGACaGCCCGCCGCGcUCGGCg -3' miRNA: 3'- -UCGa-CGaCCUG-CGGGUGGCGU-AGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 2248 | 0.66 | 0.754293 |
Target: 5'- aGGCgGC-GGGCGCgCCGCCGgGgggcggggCGGCg -3' miRNA: 3'- -UCGaCGaCCUGCG-GGUGGCgUa-------GCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 2441 | 0.67 | 0.685223 |
Target: 5'- cGGCgGCUGGcgGCGCCaGCCGCccugcggGUCGGg -3' miRNA: 3'- -UCGaCGACC--UGCGGgUGGCG-------UAGCUg -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 2501 | 0.66 | 0.735232 |
Target: 5'- cGCcGCgGGGCGCggCgGCCGCggCGGCg -3' miRNA: 3'- uCGaCGaCCUGCG--GgUGGCGuaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 3608 | 0.66 | 0.754293 |
Target: 5'- gAGCUGCUGu-UGCgCGCCGCGccCGAg -3' miRNA: 3'- -UCGACGACcuGCGgGUGGCGUa-GCUg -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 3947 | 0.66 | 0.735232 |
Target: 5'- uAGCgcGCguagaaGGCGCCggagGCCGCGUCGGCg -3' miRNA: 3'- -UCGa-CGac----CUGCGGg---UGGCGUAGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 4692 | 0.66 | 0.715825 |
Target: 5'- cAGCUGCcGcggcgagacGACGCCguCCGCggcaggcucGUCGACg -3' miRNA: 3'- -UCGACGaC---------CUGCGGguGGCG---------UAGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 7958 | 0.67 | 0.709946 |
Target: 5'- uGCUGaUGGcauGCGCCUucuggugcuuuuggcGCaCGCGUCGACg -3' miRNA: 3'- uCGACgACC---UGCGGG---------------UG-GCGUAGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 8942 | 0.66 | 0.744811 |
Target: 5'- gAGCUGCggcggGGugG-CCGCCGgAccuuuaugcgccUCGGCg -3' miRNA: 3'- -UCGACGa----CCugCgGGUGGCgU------------AGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 15534 | 0.68 | 0.617003 |
Target: 5'- cGCUGCUGGuguucgugugcccgGCCCcgggcguugccGCCGCcgCGGCg -3' miRNA: 3'- uCGACGACCug------------CGGG-----------UGGCGuaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 20774 | 0.68 | 0.615998 |
Target: 5'- gGGgaGCgacGGCGCCCGCCGCGUaGGu -3' miRNA: 3'- -UCgaCGac-CUGCGGGUGGCGUAgCUg -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 23727 | 0.66 | 0.744811 |
Target: 5'- cGGCgggucgaGCUGGACGCCgaCGCgGCcucCGGCg -3' miRNA: 3'- -UCGa------CGACCUGCGG--GUGgCGua-GCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 23849 | 0.66 | 0.725567 |
Target: 5'- cGGCggGCUGGGCGacaGCCGCccCGGCc -3' miRNA: 3'- -UCGa-CGACCUGCgggUGGCGuaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 25125 | 0.7 | 0.498088 |
Target: 5'- gAGCcGCgcGGACGCCCcCCGCcccgCGGCc -3' miRNA: 3'- -UCGaCGa-CCUGCGGGuGGCGua--GCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 25438 | 0.7 | 0.480259 |
Target: 5'- cGCUGCgccgccccgccccccGGcggcGCGCCCGCCGCcuUCGGCc -3' miRNA: 3'- uCGACGa--------------CC----UGCGGGUGGCGu-AGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 25819 | 0.72 | 0.383119 |
Target: 5'- gGGCUGCUGGccgGCGCCUgcgaccGCCGCcucAUCGuCg -3' miRNA: 3'- -UCGACGACC---UGCGGG------UGGCG---UAGCuG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 26188 | 0.68 | 0.595927 |
Target: 5'- cGGC-GCUGGACGgccgggCCGCCGCcUCGGg -3' miRNA: 3'- -UCGaCGACCUGCg-----GGUGGCGuAGCUg -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 26292 | 0.67 | 0.706013 |
Target: 5'- cGCUGgggcCUGGGCGCgCCGCUGCGgcccgucuacgUGGCg -3' miRNA: 3'- uCGAC----GACCUGCG-GGUGGCGUa----------GCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 26481 | 0.66 | 0.735232 |
Target: 5'- ---cGCUGGGCGUCgGCCGCGggcCGcGCg -3' miRNA: 3'- ucgaCGACCUGCGGgUGGCGUa--GC-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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