miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 183 0.75 0.267924
Target:  5'- gGGCUGCcuucccgcGGGCGCCC-CCGCG-CGGCu -3'
miRNA:   3'- -UCGACGa-------CCUGCGGGuGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 2057 0.78 0.165127
Target:  5'- cAGCagGCaGGACaGCCCGCCGCGcUCGGCg -3'
miRNA:   3'- -UCGa-CGaCCUG-CGGGUGGCGU-AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 2248 0.66 0.754293
Target:  5'- aGGCgGC-GGGCGCgCCGCCGgGgggcggggCGGCg -3'
miRNA:   3'- -UCGaCGaCCUGCG-GGUGGCgUa-------GCUG- -5'
5132 3' -59.7 NC_001798.1 + 2441 0.67 0.685223
Target:  5'- cGGCgGCUGGcgGCGCCaGCCGCccugcggGUCGGg -3'
miRNA:   3'- -UCGaCGACC--UGCGGgUGGCG-------UAGCUg -5'
5132 3' -59.7 NC_001798.1 + 2501 0.66 0.735232
Target:  5'- cGCcGCgGGGCGCggCgGCCGCggCGGCg -3'
miRNA:   3'- uCGaCGaCCUGCG--GgUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 3608 0.66 0.754293
Target:  5'- gAGCUGCUGu-UGCgCGCCGCGccCGAg -3'
miRNA:   3'- -UCGACGACcuGCGgGUGGCGUa-GCUg -5'
5132 3' -59.7 NC_001798.1 + 3947 0.66 0.735232
Target:  5'- uAGCgcGCguagaaGGCGCCggagGCCGCGUCGGCg -3'
miRNA:   3'- -UCGa-CGac----CUGCGGg---UGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 4692 0.66 0.715825
Target:  5'- cAGCUGCcGcggcgagacGACGCCguCCGCggcaggcucGUCGACg -3'
miRNA:   3'- -UCGACGaC---------CUGCGGguGGCG---------UAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 7958 0.67 0.709946
Target:  5'- uGCUGaUGGcauGCGCCUucuggugcuuuuggcGCaCGCGUCGACg -3'
miRNA:   3'- uCGACgACC---UGCGGG---------------UG-GCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 8942 0.66 0.744811
Target:  5'- gAGCUGCggcggGGugG-CCGCCGgAccuuuaugcgccUCGGCg -3'
miRNA:   3'- -UCGACGa----CCugCgGGUGGCgU------------AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 15534 0.68 0.617003
Target:  5'- cGCUGCUGGuguucgugugcccgGCCCcgggcguugccGCCGCcgCGGCg -3'
miRNA:   3'- uCGACGACCug------------CGGG-----------UGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 20774 0.68 0.615998
Target:  5'- gGGgaGCgacGGCGCCCGCCGCGUaGGu -3'
miRNA:   3'- -UCgaCGac-CUGCGGGUGGCGUAgCUg -5'
5132 3' -59.7 NC_001798.1 + 23727 0.66 0.744811
Target:  5'- cGGCgggucgaGCUGGACGCCgaCGCgGCcucCGGCg -3'
miRNA:   3'- -UCGa------CGACCUGCGG--GUGgCGua-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 23849 0.66 0.725567
Target:  5'- cGGCggGCUGGGCGacaGCCGCccCGGCc -3'
miRNA:   3'- -UCGa-CGACCUGCgggUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 25125 0.7 0.498088
Target:  5'- gAGCcGCgcGGACGCCCcCCGCcccgCGGCc -3'
miRNA:   3'- -UCGaCGa-CCUGCGGGuGGCGua--GCUG- -5'
5132 3' -59.7 NC_001798.1 + 25438 0.7 0.480259
Target:  5'- cGCUGCgccgccccgccccccGGcggcGCGCCCGCCGCcuUCGGCc -3'
miRNA:   3'- uCGACGa--------------CC----UGCGGGUGGCGu-AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 25819 0.72 0.383119
Target:  5'- gGGCUGCUGGccgGCGCCUgcgaccGCCGCcucAUCGuCg -3'
miRNA:   3'- -UCGACGACC---UGCGGG------UGGCG---UAGCuG- -5'
5132 3' -59.7 NC_001798.1 + 26188 0.68 0.595927
Target:  5'- cGGC-GCUGGACGgccgggCCGCCGCcUCGGg -3'
miRNA:   3'- -UCGaCGACCUGCg-----GGUGGCGuAGCUg -5'
5132 3' -59.7 NC_001798.1 + 26292 0.67 0.706013
Target:  5'- cGCUGgggcCUGGGCGCgCCGCUGCGgcccgucuacgUGGCg -3'
miRNA:   3'- uCGAC----GACCUGCG-GGUGGCGUa----------GCUG- -5'
5132 3' -59.7 NC_001798.1 + 26481 0.66 0.735232
Target:  5'- ---cGCUGGGCGUCgGCCGCGggcCGcGCg -3'
miRNA:   3'- ucgaCGACCUGCGGgUGGCGUa--GC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.