miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 105337 0.66 0.735232
Target:  5'- uGCUGCUcgaucGGGCGUauCCGgCGCucgauGUCGACg -3'
miRNA:   3'- uCGACGA-----CCUGCG--GGUgGCG-----UAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 137506 0.66 0.735232
Target:  5'- cGCgUGCUGuACGUCCGCCacgaacaggGCcgCGACg -3'
miRNA:   3'- uCG-ACGACcUGCGGGUGG---------CGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 3947 0.66 0.735232
Target:  5'- uAGCgcGCguagaaGGCGCCggagGCCGCGUCGGCg -3'
miRNA:   3'- -UCGa-CGac----CUGCGGg---UGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 26481 0.66 0.735232
Target:  5'- ---cGCUGGGCGUCgGCCGCGggcCGcGCg -3'
miRNA:   3'- ucgaCGACCUGCGGgUGGCGUa--GC-UG- -5'
5132 3' -59.7 NC_001798.1 + 131055 0.66 0.735232
Target:  5'- uAGC-GCgaGGucaccGCGCCCACCGCggCGuACa -3'
miRNA:   3'- -UCGaCGa-CC-----UGCGGGUGGCGuaGC-UG- -5'
5132 3' -59.7 NC_001798.1 + 34853 0.66 0.735232
Target:  5'- cGCcggGCgggGGACGCCUuCCGCc-CGGCg -3'
miRNA:   3'- uCGa--CGa--CCUGCGGGuGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 109447 0.66 0.734269
Target:  5'- cGGCUGgaGGcGCGCCUcgggcaucuggugGCCGCGauccUCGAg -3'
miRNA:   3'- -UCGACgaCC-UGCGGG-------------UGGCGU----AGCUg -5'
5132 3' -59.7 NC_001798.1 + 41650 0.66 0.732342
Target:  5'- gAGgUGCUGGAgGgagcggaCCGcgagcauggcgugcCCGCAUCGACg -3'
miRNA:   3'- -UCgACGACCUgCg------GGU--------------GGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 92985 0.66 0.725567
Target:  5'- uGGCccGCgcGGcCGCCCACCugGCGuUCGACg -3'
miRNA:   3'- -UCGa-CGa-CCuGCGGGUGG--CGU-AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 23849 0.66 0.725567
Target:  5'- cGGCggGCUGGGCGacaGCCGCccCGGCc -3'
miRNA:   3'- -UCGa-CGACCUGCgggUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 153873 0.66 0.725567
Target:  5'- gGGggGCUGuuCGCCCACUcuGCGUCGuCg -3'
miRNA:   3'- -UCgaCGACcuGCGGGUGG--CGUAGCuG- -5'
5132 3' -59.7 NC_001798.1 + 52564 0.66 0.715825
Target:  5'- cGGCUGCUGGGC-CUgGCCGaCA-CGGu -3'
miRNA:   3'- -UCGACGACCUGcGGgUGGC-GUaGCUg -5'
5132 3' -59.7 NC_001798.1 + 124515 0.66 0.715825
Target:  5'- gGGCUGC-GGGCGugucguCCCACacuCGCGUCuGGCu -3'
miRNA:   3'- -UCGACGaCCUGC------GGGUG---GCGUAG-CUG- -5'
5132 3' -59.7 NC_001798.1 + 4692 0.66 0.715825
Target:  5'- cAGCUGCcGcggcgagacGACGCCguCCGCggcaggcucGUCGACg -3'
miRNA:   3'- -UCGACGaC---------CUGCGGguGGCG---------UAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 7958 0.67 0.709946
Target:  5'- uGCUGaUGGcauGCGCCUucuggugcuuuuggcGCaCGCGUCGACg -3'
miRNA:   3'- uCGACgACC---UGCGGG---------------UG-GCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 26292 0.67 0.706013
Target:  5'- cGCUGgggcCUGGGCGCgCCGCUGCGgcccgucuacgUGGCg -3'
miRNA:   3'- uCGAC----GACCUGCG-GGUGGCGUa----------GCUG- -5'
5132 3' -59.7 NC_001798.1 + 77603 0.67 0.706013
Target:  5'- cAGgaGCUGGgcaaggucaucgGCGCCacgcgaCGCCGCGcCGACg -3'
miRNA:   3'- -UCgaCGACC------------UGCGG------GUGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 100860 0.67 0.696141
Target:  5'- gGGCUGCUGGuccugGCCgGCCugGUcgCGGCc -3'
miRNA:   3'- -UCGACGACCug---CGGgUGG--CGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 32058 0.67 0.696141
Target:  5'- cGGCguccGC-GGGCGCCgCGCCccCGUCGGCg -3'
miRNA:   3'- -UCGa---CGaCCUGCGG-GUGGc-GUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 52484 0.67 0.696141
Target:  5'- uGGcCUGCggGGACGCgCGCCggcGCAgggaCGACg -3'
miRNA:   3'- -UC-GACGa-CCUGCGgGUGG---CGUa---GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.