miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 5' -55.9 NC_001798.1 + 1752 0.66 0.916629
Target:  5'- -cGCCGGccaGCGCACGGcGCA-CUGcACGg -3'
miRNA:   3'- gaCGGCC---UGCGUGUC-UGUcGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 16848 0.66 0.916629
Target:  5'- gUGCauGACGC-CGGGCGGCaagGUGCc -3'
miRNA:   3'- gACGgcCUGCGuGUCUGUCGa--CAUGc -5'
5132 5' -55.9 NC_001798.1 + 14353 0.66 0.916629
Target:  5'- uUGUauCGGACGCGgGGcCGGUggGUGCGg -3'
miRNA:   3'- gACG--GCCUGCGUgUCuGUCGa-CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 116316 0.66 0.921721
Target:  5'- aCUGCCGGAUugacgcggggggGCACGagcccgucuacgcGGCGGC-GUGCa -3'
miRNA:   3'- -GACGGCCUG------------CGUGU-------------CUGUCGaCAUGc -5'
5132 5' -55.9 NC_001798.1 + 86936 0.66 0.922275
Target:  5'- cCUGCCGucgcacGCGCGCAGGCuggAGCUcUGCc -3'
miRNA:   3'- -GACGGCc-----UGCGUGUCUG---UCGAcAUGc -5'
5132 5' -55.9 NC_001798.1 + 60224 0.66 0.902109
Target:  5'- gUGCUGGACGacgcgcccuccuCGCGGGCGGCaaaggugacgcagGUGCGc -3'
miRNA:   3'- gACGGCCUGC------------GUGUCUGUCGa------------CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 143813 0.66 0.898268
Target:  5'- -gGcCCGGgcgGCGCGCGGcCAGCcGUugGa -3'
miRNA:   3'- gaC-GGCC---UGCGUGUCuGUCGaCAugC- -5'
5132 5' -55.9 NC_001798.1 + 99324 0.67 0.877111
Target:  5'- aCUGCaucgucgaggaggUGGACGCGCGGuCGGUguacccGUACGa -3'
miRNA:   3'- -GACG-------------GCCUGCGUGUCuGUCGa-----CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 12276 0.67 0.877827
Target:  5'- -gGCCGGugGCGCAGACccacaGGCc----- -3'
miRNA:   3'- gaCGGCCugCGUGUCUG-----UCGacaugc -5'
5132 5' -55.9 NC_001798.1 + 66582 0.67 0.877827
Target:  5'- uUGCucuccucgCGGGCGCACcGACAGaaGUACu -3'
miRNA:   3'- gACG--------GCCUGCGUGuCUGUCgaCAUGc -5'
5132 5' -55.9 NC_001798.1 + 112780 0.67 0.877827
Target:  5'- -gGgCGGACGCACGGA----UGUGCGg -3'
miRNA:   3'- gaCgGCCUGCGUGUCUgucgACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 125774 0.67 0.877827
Target:  5'- -gGCCGaGACGCACcuccGGGCcgAGgUGUACa -3'
miRNA:   3'- gaCGGC-CUGCGUG----UCUG--UCgACAUGc -5'
5132 5' -55.9 NC_001798.1 + 137492 0.67 0.877827
Target:  5'- -gGCCGGG-GCAgAGccGCGuGCUGUACGu -3'
miRNA:   3'- gaCGGCCUgCGUgUC--UGU-CGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 23688 0.67 0.877827
Target:  5'- -gGCCGcGACGcCACGGGCcGCUucACGg -3'
miRNA:   3'- gaCGGC-CUGC-GUGUCUGuCGAcaUGC- -5'
5132 5' -55.9 NC_001798.1 + 121493 0.67 0.877827
Target:  5'- cCUGCCGGucGCGUGC-GACgcccaaGGCgUGUACGa -3'
miRNA:   3'- -GACGGCC--UGCGUGuCUG------UCG-ACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 17970 0.67 0.884866
Target:  5'- -gGuCCGGACGuCGgGGGgGGCUGcGCGg -3'
miRNA:   3'- gaC-GGCCUGC-GUgUCUgUCGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 31337 0.67 0.884866
Target:  5'- -gGCCGGcggggggcGCGCGCAGGCgcGGCggGUggGCGa -3'
miRNA:   3'- gaCGGCC--------UGCGUGUCUG--UCGa-CA--UGC- -5'
5132 5' -55.9 NC_001798.1 + 48170 0.66 0.891681
Target:  5'- cCUGgCGGccACGCACGccCGGCUGgcgGCGg -3'
miRNA:   3'- -GACgGCC--UGCGUGUcuGUCGACa--UGC- -5'
5132 5' -55.9 NC_001798.1 + 91262 0.66 0.891681
Target:  5'- uCUGCCGG-CgGCA-AGGCGGCgGUGCc -3'
miRNA:   3'- -GACGGCCuG-CGUgUCUGUCGaCAUGc -5'
5132 5' -55.9 NC_001798.1 + 12673 0.66 0.896316
Target:  5'- aCUGCCGGccaGCGCGCcgaugaucaggcccGGGuuGCUGgggGCGg -3'
miRNA:   3'- -GACGGCC---UGCGUG--------------UCUguCGACa--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.