Results 61 - 80 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5133 | 3' | -60 | NC_001798.1 | + | 84532 | 0.67 | 0.730695 |
Target: 5'- --cCAUCCCCGC-CAUCgCGACCGg- -3' miRNA: 3'- gauGUGGGGGCGcGUGGaGCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 54616 | 0.67 | 0.730695 |
Target: 5'- -gGCGCCCCCGCGCcuCC-CGcCCc-- -3' miRNA: 3'- gaUGUGGGGGCGCGu-GGaGCuGGcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 30428 | 0.67 | 0.730695 |
Target: 5'- -cACGCCCCCG-GCccgGCCccCGGCCGa- -3' miRNA: 3'- gaUGUGGGGGCgCG---UGGa-GCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 123756 | 0.67 | 0.728794 |
Target: 5'- -cGCACCCCCggaccccgcugcuGUGCACCcuagccuUCGGCCa-- -3' miRNA: 3'- gaUGUGGGGG-------------CGCGUGG-------AGCUGGcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 2106 | 0.67 | 0.72116 |
Target: 5'- --cCGCCCCCgGCGCGgCCcgCGGCCa-- -3' miRNA: 3'- gauGUGGGGG-CGCGU-GGa-GCUGGcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 154436 | 0.67 | 0.72116 |
Target: 5'- -gGCAgCCCCGCGCGCCcccuUCc-CCGUc -3' miRNA: 3'- gaUGUgGGGGCGCGUGG----AGcuGGCAc -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 104315 | 0.67 | 0.72116 |
Target: 5'- -gACGCCCCCcgaGCGaugGCCUCcGCCGg- -3' miRNA: 3'- gaUGUGGGGG---CGCg--UGGAGcUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 137383 | 0.67 | 0.72116 |
Target: 5'- -cGCACCCCUcgGCGUucucCCgggCGACCGg- -3' miRNA: 3'- gaUGUGGGGG--CGCGu---GGa--GCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 98 | 0.67 | 0.72116 |
Target: 5'- -gGCAgCCCCGCGCGCCcccuUCc-CCGUc -3' miRNA: 3'- gaUGUgGGGGCGCGUGG----AGcuGGCAc -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 24984 | 0.67 | 0.72116 |
Target: 5'- cCUGCGCCCCCugcuggcCGaCACCgucgccgCGGCCGa- -3' miRNA: 3'- -GAUGUGGGGGc------GC-GUGGa------GCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 26280 | 0.67 | 0.72116 |
Target: 5'- -cGCGCCUgCGCGCGCUggGGCC-UGg -3' miRNA: 3'- gaUGUGGGgGCGCGUGGagCUGGcAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 31139 | 0.67 | 0.72116 |
Target: 5'- -aGCGCCCCgGCGCGggggCGGCgGUGc -3' miRNA: 3'- gaUGUGGGGgCGCGUgga-GCUGgCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 66667 | 0.68 | 0.642994 |
Target: 5'- --cCGCCUCCGCGU-UCUCGGgCGUGa -3' miRNA: 3'- gauGUGGGGGCGCGuGGAGCUgGCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 24507 | 0.68 | 0.642994 |
Target: 5'- --cCGCCUCCGCGCcgGCCggGGCCGa- -3' miRNA: 3'- gauGUGGGGGCGCG--UGGagCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 199 | 0.68 | 0.652873 |
Target: 5'- -gGCGCCCCCGCGCGgCUuuuuucccgCGcCCGc- -3' miRNA: 3'- gaUGUGGGGGCGCGUgGA---------GCuGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 59453 | 0.68 | 0.652873 |
Target: 5'- -aACGCaCCCCGCGUGCC-CGggcGCgGUGa -3' miRNA: 3'- gaUGUG-GGGGCGCGUGGaGC---UGgCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 27955 | 0.68 | 0.652873 |
Target: 5'- -cGCGCCCCgGCGCuCCa--GCCGUGc -3' miRNA: 3'- gaUGUGGGGgCGCGuGGagcUGGCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 154537 | 0.68 | 0.652873 |
Target: 5'- -gGCGCCCCCGCGCGgCUuuuuucccgCGcCCGc- -3' miRNA: 3'- gaUGUGGGGGCGCGUgGA---------GCuGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 37054 | 0.68 | 0.662737 |
Target: 5'- -gACACCCCCaCGgacuCGCCUCcACCGUa -3' miRNA: 3'- gaUGUGGGGGcGC----GUGGAGcUGGCAc -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 115980 | 0.68 | 0.633106 |
Target: 5'- uCUGCGCCCUgGCGCGgCUCGugACUcaGUGc -3' miRNA: 3'- -GAUGUGGGGgCGCGUgGAGC--UGG--CAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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