miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 131166 1.08 0.00154
Target:  5'- gCUACACCCCCGCGCACCUCGACCGUGg -3'
miRNA:   3'- -GAUGUGGGGGCGCGUGGAGCUGGCAC- -5'
5133 3' -60 NC_001798.1 + 149154 0.78 0.181153
Target:  5'- ---uGCCCCCGagGCGCCUCGGCCGgUGg -3'
miRNA:   3'- gaugUGGGGGCg-CGUGGAGCUGGC-AC- -5'
5133 3' -60 NC_001798.1 + 39522 0.77 0.219489
Target:  5'- gCUGCuccCCUCCGCGCcgcGCCUCG-CCGUGg -3'
miRNA:   3'- -GAUGu--GGGGGCGCG---UGGAGCuGGCAC- -5'
5133 3' -60 NC_001798.1 + 36011 0.76 0.246823
Target:  5'- -cACGCCCCCcacCGCGCCUUGGCUGUu -3'
miRNA:   3'- gaUGUGGGGGc--GCGUGGAGCUGGCAc -5'
5133 3' -60 NC_001798.1 + 100386 0.76 0.258523
Target:  5'- gCUGCGCCucaCCCGCGaCGCgCUCGAgCCGUGc -3'
miRNA:   3'- -GAUGUGG---GGGCGC-GUG-GAGCU-GGCAC- -5'
5133 3' -60 NC_001798.1 + 44169 0.75 0.283276
Target:  5'- gUACGCCCCCagcacGCGCGCCUCG-UgGUGc -3'
miRNA:   3'- gAUGUGGGGG-----CGCGUGGAGCuGgCAC- -5'
5133 3' -60 NC_001798.1 + 111736 0.75 0.283276
Target:  5'- gCUugGCCCCCGCGCcCC-CGGCCc-- -3'
miRNA:   3'- -GAugUGGGGGCGCGuGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 3248 0.74 0.345722
Target:  5'- -aGCACCCCCGCgGCGCCguaGCCGg- -3'
miRNA:   3'- gaUGUGGGGGCG-CGUGGagcUGGCac -5'
5133 3' -60 NC_001798.1 + 139335 0.73 0.353241
Target:  5'- -gGCGCCCgCGCGCGCUgugCGGCCaUGg -3'
miRNA:   3'- gaUGUGGGgGCGCGUGGa--GCUGGcAC- -5'
5133 3' -60 NC_001798.1 + 24703 0.73 0.35628
Target:  5'- -cGCGCCCCCGCGC-CCggggcccgcgggcgCGGCCGc- -3'
miRNA:   3'- gaUGUGGGGGCGCGuGGa-------------GCUGGCac -5'
5133 3' -60 NC_001798.1 + 23493 0.73 0.360874
Target:  5'- -cGCGCCCCCGCcaGCGCCgcaGACCa-- -3'
miRNA:   3'- gaUGUGGGGGCG--CGUGGag-CUGGcac -5'
5133 3' -60 NC_001798.1 + 135022 0.73 0.376483
Target:  5'- ---uGCCCCCGCGgGCauggcCGGCCGUGg -3'
miRNA:   3'- gaugUGGGGGCGCgUGga---GCUGGCAC- -5'
5133 3' -60 NC_001798.1 + 98615 0.72 0.425102
Target:  5'- -gGC-CCCCCGCGCcucgggcggcgugGCCgCGACCGUc -3'
miRNA:   3'- gaUGuGGGGGCGCG-------------UGGaGCUGGCAc -5'
5133 3' -60 NC_001798.1 + 25294 0.72 0.425959
Target:  5'- -cACACgCCgGCGC-CCUCGGCCGc- -3'
miRNA:   3'- gaUGUGgGGgCGCGuGGAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 134012 0.72 0.434574
Target:  5'- -gGCuGCCCCCGCGCACgCgCGACUGc- -3'
miRNA:   3'- gaUG-UGGGGGCGCGUG-GaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 103056 0.72 0.44329
Target:  5'- -cGCACCCCCuCGCGCgUCG-CCGg- -3'
miRNA:   3'- gaUGUGGGGGcGCGUGgAGCuGGCac -5'
5133 3' -60 NC_001798.1 + 31582 0.71 0.452103
Target:  5'- -cGCGCCCCCGCGCgGCCgUCGcCCc-- -3'
miRNA:   3'- gaUGUGGGGGCGCG-UGG-AGCuGGcac -5'
5133 3' -60 NC_001798.1 + 135528 0.71 0.461011
Target:  5'- -gACGCCCgCCGgGC-CCUCGAggcguCCGUGc -3'
miRNA:   3'- gaUGUGGG-GGCgCGuGGAGCU-----GGCAC- -5'
5133 3' -60 NC_001798.1 + 94209 0.71 0.470011
Target:  5'- gCUGCAgcUCCUCGCGCggcgguccaACCUCG-CCGUGu -3'
miRNA:   3'- -GAUGU--GGGGGCGCG---------UGGAGCuGGCAC- -5'
5133 3' -60 NC_001798.1 + 26072 0.71 0.470011
Target:  5'- -cGCGCCgCCGCuGCGCCUCuGCCGc- -3'
miRNA:   3'- gaUGUGGgGGCG-CGUGGAGcUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.