miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 98 0.67 0.72116
Target:  5'- -gGCAgCCCCGCGCGCCcccuUCc-CCGUc -3'
miRNA:   3'- gaUGUgGGGGCGCGUGG----AGcuGGCAc -5'
5133 3' -60 NC_001798.1 + 167 0.66 0.767957
Target:  5'- ----cCCCCCGCGCGCCgcggGGCUGc- -3'
miRNA:   3'- gauguGGGGGCGCGUGGag--CUGGCac -5'
5133 3' -60 NC_001798.1 + 199 0.68 0.652873
Target:  5'- -gGCGCCCCCGCGCGgCUuuuuucccgCGcCCGc- -3'
miRNA:   3'- gaUGUGGGGGCGCGUgGA---------GCuGGCac -5'
5133 3' -60 NC_001798.1 + 687 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 717 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 747 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 777 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 807 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 837 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 867 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 897 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 1207 0.71 0.49753
Target:  5'- -aGCACCgucCCCGCGCgGCCcgCGGCCGa- -3'
miRNA:   3'- gaUGUGG---GGGCGCG-UGGa-GCUGGCac -5'
5133 3' -60 NC_001798.1 + 1957 0.69 0.564257
Target:  5'- -aGCACgCCCUGCGCGCCcagCG-CCGa- -3'
miRNA:   3'- gaUGUG-GGGGCGCGUGGa--GCuGGCac -5'
5133 3' -60 NC_001798.1 + 2106 0.67 0.72116
Target:  5'- --cCGCCCCCgGCGCGgCCcgCGGCCa-- -3'
miRNA:   3'- gauGUGGGGG-CGCGU-GGa-GCUGGcac -5'
5133 3' -60 NC_001798.1 + 2618 0.66 0.75879
Target:  5'- -gGCGCCgCCCgGCgGCGCCcUGGCCGg- -3'
miRNA:   3'- gaUGUGG-GGG-CG-CGUGGaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 3135 0.69 0.59362
Target:  5'- --cCGCCUCCGCGCGCC--GGCCGc- -3'
miRNA:   3'- gauGUGGGGGCGCGUGGagCUGGCac -5'
5133 3' -60 NC_001798.1 + 3248 0.74 0.345722
Target:  5'- -aGCACCCCCGCgGCGCCguaGCCGg- -3'
miRNA:   3'- gaUGUGGGGGCG-CGUGGagcUGGCac -5'
5133 3' -60 NC_001798.1 + 4159 0.69 0.603469
Target:  5'- -gGCACCCCCGC-CuCCUCGucguCCGc- -3'
miRNA:   3'- gaUGUGGGGGCGcGuGGAGCu---GGCac -5'
5133 3' -60 NC_001798.1 + 5370 0.67 0.701883
Target:  5'- -gACGCCCgCGCGU-CCgCGuCCGUGg -3'
miRNA:   3'- gaUGUGGGgGCGCGuGGaGCuGGCAC- -5'
5133 3' -60 NC_001798.1 + 8691 0.69 0.59362
Target:  5'- gUGCGCCgCCGUcgGCGCCUUagGACCGa- -3'
miRNA:   3'- gAUGUGGgGGCG--CGUGGAG--CUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.