miRNA: 3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5'
miRNA: 3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5'
miRNA: 3'- -GCGUauuCUCCaGCGCCCCCGcauuu -5'
Results 61 - 63 of 63 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5133 | 5' | -55.4 | NC_001798.1 | + | 153574 | 0.7 | 0.712906 |
|
Target: 5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3' miRNA: 3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5' |
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| 5133 | 5' | -55.4 | NC_001798.1 | + | 153612 | 0.7 | 0.712906 |
|
Target: 5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3' miRNA: 3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5' |
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| 5133 | 5' | -55.4 | NC_001798.1 | + | 153677 | 0.69 | 0.799622 |
|
Target: 5'- cCGCGggcGGGGaCGCGGGGGCc---- -3' miRNA: 3'- -GCGUauuCUCCaGCGCCCCCGcauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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