miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 5' -55.4 NC_001798.1 + 131203 1.06 0.004609
Target:  5'- uCGCAUAAGAGGUCGCGGGGGCGUAAAg -3'
miRNA:   3'- -GCGUAUUCUCCAGCGCCCCCGCAUUU- -5'
5133 5' -55.4 NC_001798.1 + 55980 0.83 0.163979
Target:  5'- gCGCcgGGGAGGcCGCGGGGGCGa--- -3'
miRNA:   3'- -GCGuaUUCUCCaGCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 16054 0.8 0.250948
Target:  5'- aCGCGUGGuAGGUCGCuGGGGGCGgcGGg -3'
miRNA:   3'- -GCGUAUUcUCCAGCG-CCCCCGCauUU- -5'
5133 5' -55.4 NC_001798.1 + 15465 0.76 0.401278
Target:  5'- uCGCGUGgguagacgugggcggGGGGGUCGUGGGGGCu---- -3'
miRNA:   3'- -GCGUAU---------------UCUCCAGCGCCCCCGcauuu -5'
5133 5' -55.4 NC_001798.1 + 43247 0.74 0.518671
Target:  5'- uGCAUGAGAGccgcgaUCGcCGGGGGCGUc-- -3'
miRNA:   3'- gCGUAUUCUCc-----AGC-GCCCCCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 57507 0.74 0.528609
Target:  5'- uCGCcuUGcGGGGUUGgGGGGGCGUGGGu -3'
miRNA:   3'- -GCGu-AUuCUCCAGCgCCCCCGCAUUU- -5'
5133 5' -55.4 NC_001798.1 + 41443 0.73 0.54869
Target:  5'- gGCGUGGGGGGUCcaugccccgccgGgGGGGGCGg--- -3'
miRNA:   3'- gCGUAUUCUCCAG------------CgCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 85917 0.72 0.610116
Target:  5'- uGCAcc-GAGGgcaagCGCGGGGGCGg--- -3'
miRNA:   3'- gCGUauuCUCCa----GCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 12708 0.72 0.630803
Target:  5'- uGCu--GGGGG-CgGCGGGGGCGUGGu -3'
miRNA:   3'- gCGuauUCUCCaG-CGCCCCCGCAUUu -5'
5133 5' -55.4 NC_001798.1 + 90838 0.71 0.651495
Target:  5'- aGCGUGAuGAcGGUCcCGGcGGGCGUGAu -3'
miRNA:   3'- gCGUAUU-CU-CCAGcGCC-CCCGCAUUu -5'
5133 5' -55.4 NC_001798.1 + 52235 0.71 0.682392
Target:  5'- gGCucucGGuGGUCGUGGGGGCGc--- -3'
miRNA:   3'- gCGuau-UCuCCAGCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 46665 0.71 0.683416
Target:  5'- aGCAUcacguGGGGcccggggccggauacCGCGGGGGCGUGAAu -3'
miRNA:   3'- gCGUAuu---CUCCa--------------GCGCCCCCGCAUUU- -5'
5133 5' -55.4 NC_001798.1 + 15680 0.71 0.691597
Target:  5'- uCGUcgGGGGgaguaguGGUUGCGGGGGCGg--- -3'
miRNA:   3'- -GCGuaUUCU-------CCAGCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 30936 0.71 0.692618
Target:  5'- gGCGgcGGGGGUCGggcgGGGGGCGg--- -3'
miRNA:   3'- gCGUauUCUCCAGCg---CCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 153612 0.7 0.712906
Target:  5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3'
miRNA:   3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 39809 0.7 0.712906
Target:  5'- aCGCc--GGuGGUCGCGGGuGGCGg--- -3'
miRNA:   3'- -GCGuauUCuCCAGCGCCC-CCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 153536 0.7 0.712906
Target:  5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3'
miRNA:   3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 153574 0.7 0.712906
Target:  5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3'
miRNA:   3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 59656 0.7 0.726945
Target:  5'- uCGCGgagAGGGGGggcgacucggcucgCGUGGGGGCGgcGGg -3'
miRNA:   3'- -GCGUa--UUCUCCa-------------GCGCCCCCGCauUU- -5'
5133 5' -55.4 NC_001798.1 + 147613 0.7 0.742787
Target:  5'- gGCGggGAGAGGggGgGGGGGCGg--- -3'
miRNA:   3'- gCGUa-UUCUCCagCgCCCCCGCauuu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.