Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5133 | 5' | -55.4 | NC_001798.1 | + | 131203 | 1.06 | 0.004609 |
Target: 5'- uCGCAUAAGAGGUCGCGGGGGCGUAAAg -3' miRNA: 3'- -GCGUAUUCUCCAGCGCCCCCGCAUUU- -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 55980 | 0.83 | 0.163979 |
Target: 5'- gCGCcgGGGAGGcCGCGGGGGCGa--- -3' miRNA: 3'- -GCGuaUUCUCCaGCGCCCCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 16054 | 0.8 | 0.250948 |
Target: 5'- aCGCGUGGuAGGUCGCuGGGGGCGgcGGg -3' miRNA: 3'- -GCGUAUUcUCCAGCG-CCCCCGCauUU- -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 15465 | 0.76 | 0.401278 |
Target: 5'- uCGCGUGgguagacgugggcggGGGGGUCGUGGGGGCu---- -3' miRNA: 3'- -GCGUAU---------------UCUCCAGCGCCCCCGcauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 43247 | 0.74 | 0.518671 |
Target: 5'- uGCAUGAGAGccgcgaUCGcCGGGGGCGUc-- -3' miRNA: 3'- gCGUAUUCUCc-----AGC-GCCCCCGCAuuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 57507 | 0.74 | 0.528609 |
Target: 5'- uCGCcuUGcGGGGUUGgGGGGGCGUGGGu -3' miRNA: 3'- -GCGu-AUuCUCCAGCgCCCCCGCAUUU- -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 41443 | 0.73 | 0.54869 |
Target: 5'- gGCGUGGGGGGUCcaugccccgccgGgGGGGGCGg--- -3' miRNA: 3'- gCGUAUUCUCCAG------------CgCCCCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 85917 | 0.72 | 0.610116 |
Target: 5'- uGCAcc-GAGGgcaagCGCGGGGGCGg--- -3' miRNA: 3'- gCGUauuCUCCa----GCGCCCCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 12708 | 0.72 | 0.630803 |
Target: 5'- uGCu--GGGGG-CgGCGGGGGCGUGGu -3' miRNA: 3'- gCGuauUCUCCaG-CGCCCCCGCAUUu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 90838 | 0.71 | 0.651495 |
Target: 5'- aGCGUGAuGAcGGUCcCGGcGGGCGUGAu -3' miRNA: 3'- gCGUAUU-CU-CCAGcGCC-CCCGCAUUu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 52235 | 0.71 | 0.682392 |
Target: 5'- gGCucucGGuGGUCGUGGGGGCGc--- -3' miRNA: 3'- gCGuau-UCuCCAGCGCCCCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 46665 | 0.71 | 0.683416 |
Target: 5'- aGCAUcacguGGGGcccggggccggauacCGCGGGGGCGUGAAu -3' miRNA: 3'- gCGUAuu---CUCCa--------------GCGCCCCCGCAUUU- -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 15680 | 0.71 | 0.691597 |
Target: 5'- uCGUcgGGGGgaguaguGGUUGCGGGGGCGg--- -3' miRNA: 3'- -GCGuaUUCU-------CCAGCGCCCCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 30936 | 0.71 | 0.692618 |
Target: 5'- gGCGgcGGGGGUCGggcgGGGGGCGg--- -3' miRNA: 3'- gCGUauUCUCCAGCg---CCCCCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 153612 | 0.7 | 0.712906 |
Target: 5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3' miRNA: 3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 39809 | 0.7 | 0.712906 |
Target: 5'- aCGCc--GGuGGUCGCGGGuGGCGg--- -3' miRNA: 3'- -GCGuauUCuCCAGCGCCC-CCGCauuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 153536 | 0.7 | 0.712906 |
Target: 5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3' miRNA: 3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 153574 | 0.7 | 0.712906 |
Target: 5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3' miRNA: 3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 59656 | 0.7 | 0.726945 |
Target: 5'- uCGCGgagAGGGGGggcgacucggcucgCGUGGGGGCGgcGGg -3' miRNA: 3'- -GCGUa--UUCUCCa-------------GCGCCCCCGCauUU- -5' |
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5133 | 5' | -55.4 | NC_001798.1 | + | 147613 | 0.7 | 0.742787 |
Target: 5'- gGCGggGAGAGGggGgGGGGGCGg--- -3' miRNA: 3'- gCGUa-UUCUCCagCgCCCCCGCauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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