miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 5' -55.4 NC_001798.1 + 2997 0.67 0.888155
Target:  5'- cCGCGggccccGGG-CGCGGGGGCGc--- -3'
miRNA:   3'- -GCGUauuc--UCCaGCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 4203 0.68 0.820907
Target:  5'- gGCGUGgucugcggcgcuggcGGGGG-CGCGGGcGGCGUc-- -3'
miRNA:   3'- gCGUAU---------------UCUCCaGCGCCC-CCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 8554 0.66 0.894933
Target:  5'- uCGCGgc-GAGGg-GUGGGGGCGa--- -3'
miRNA:   3'- -GCGUauuCUCCagCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 12708 0.72 0.630803
Target:  5'- uGCu--GGGGG-CgGCGGGGGCGUGGu -3'
miRNA:   3'- gCGuauUCUCCaG-CGCCCCCGCAUUu -5'
5133 5' -55.4 NC_001798.1 + 14316 0.66 0.913843
Target:  5'- --aGUGGGGGGUgCGUGGGGagGCGUGc- -3'
miRNA:   3'- gcgUAUUCUCCA-GCGCCCC--CGCAUuu -5'
5133 5' -55.4 NC_001798.1 + 15044 0.67 0.881147
Target:  5'- aGCGUGGGgcggaugggcccGGGgcgCGCGGGGG-GUGGu -3'
miRNA:   3'- gCGUAUUC------------UCCa--GCGCCCCCgCAUUu -5'
5133 5' -55.4 NC_001798.1 + 15465 0.76 0.401278
Target:  5'- uCGCGUGgguagacgugggcggGGGGGUCGUGGGGGCu---- -3'
miRNA:   3'- -GCGUAU---------------UCUCCAGCGCCCCCGcauuu -5'
5133 5' -55.4 NC_001798.1 + 15680 0.71 0.691597
Target:  5'- uCGUcgGGGGgaguaguGGUUGCGGGGGCGg--- -3'
miRNA:   3'- -GCGuaUUCU-------CCAGCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 15901 0.68 0.826074
Target:  5'- cCGCGggcGGGGUgGgaaGGGGGCGUAc- -3'
miRNA:   3'- -GCGUauuCUCCAgCg--CCCCCGCAUuu -5'
5133 5' -55.4 NC_001798.1 + 16054 0.8 0.250948
Target:  5'- aCGCGUGGuAGGUCGCuGGGGGCGgcGGg -3'
miRNA:   3'- -GCGUAUUcUCCAGCG-CCCCCGCauUU- -5'
5133 5' -55.4 NC_001798.1 + 17230 0.67 0.888155
Target:  5'- cCGCcuUucGGGGUCGCGcGGGGCc---- -3'
miRNA:   3'- -GCGu-AuuCUCCAGCGC-CCCCGcauuu -5'
5133 5' -55.4 NC_001798.1 + 20608 0.67 0.888155
Target:  5'- uCGCAgguUGAuucGGGGUCGCuuggauuugcggGGGGGUGUGu- -3'
miRNA:   3'- -GCGU---AUU---CUCCAGCG------------CCCCCGCAUuu -5'
5133 5' -55.4 NC_001798.1 + 23539 0.67 0.873913
Target:  5'- gCGCGgacgacGAGGagGCGGGGGUGc--- -3'
miRNA:   3'- -GCGUauu---CUCCagCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 26816 0.66 0.925241
Target:  5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3'
miRNA:   3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 26846 0.66 0.925241
Target:  5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3'
miRNA:   3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 26876 0.66 0.925241
Target:  5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3'
miRNA:   3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 26906 0.66 0.925241
Target:  5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3'
miRNA:   3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 26950 0.66 0.925241
Target:  5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3'
miRNA:   3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 26980 0.66 0.925241
Target:  5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3'
miRNA:   3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 27010 0.66 0.925241
Target:  5'- gGCGggcGGGGGUCG-GGcGGGCGg--- -3'
miRNA:   3'- gCGUau-UCUCCAGCgCC-CCCGCauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.