miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 5' -55.4 NC_001798.1 + 15044 0.67 0.881147
Target:  5'- aGCGUGGGgcggaugggcccGGGgcgCGCGGGGG-GUGGu -3'
miRNA:   3'- gCGUAUUC------------UCCa--GCGCCCCCgCAUUu -5'
5133 5' -55.4 NC_001798.1 + 149650 0.67 0.881147
Target:  5'- gCGCGUGAGgccgggcgccGGGUCGCGGgccccGGGCu---- -3'
miRNA:   3'- -GCGUAUUC----------UCCAGCGCC-----CCCGcauuu -5'
5133 5' -55.4 NC_001798.1 + 34962 0.67 0.87828
Target:  5'- gCGCcgGAGGGGgcggccgccgaggUGCGGGGGCc---- -3'
miRNA:   3'- -GCGuaUUCUCCa------------GCGCCCCCGcauuu -5'
5133 5' -55.4 NC_001798.1 + 23539 0.67 0.873913
Target:  5'- gCGCGgacgacGAGGagGCGGGGGUGc--- -3'
miRNA:   3'- -GCGUauu---CUCCagCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 125693 0.67 0.873913
Target:  5'- gGCGaAGGAguccgacgucGGgcgcgCGCGGGGGCGgcGAg -3'
miRNA:   3'- gCGUaUUCU----------CCa----GCGCCCCCGCauUU- -5'
5133 5' -55.4 NC_001798.1 + 85271 0.67 0.866457
Target:  5'- cCGCGcgcGAGGcuUCGgGGGGGCGg--- -3'
miRNA:   3'- -GCGUauuCUCC--AGCgCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 148036 0.68 0.850905
Target:  5'- cCGCGUGGGcgcGGG-CGgGGGGGUGg--- -3'
miRNA:   3'- -GCGUAUUC---UCCaGCgCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 81985 0.68 0.850905
Target:  5'- cCGCcgAAGGagcGGUCGUccccGGGGGCGa--- -3'
miRNA:   3'- -GCGuaUUCU---CCAGCG----CCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 32906 0.68 0.834542
Target:  5'- gGCAggGGGAGGUgGgGGGGGgGa--- -3'
miRNA:   3'- gCGUa-UUCUCCAgCgCCCCCgCauuu -5'
5133 5' -55.4 NC_001798.1 + 36698 0.68 0.834542
Target:  5'- gCGCAggggagGGGAGGaCGCGGGGGa----- -3'
miRNA:   3'- -GCGUa-----UUCUCCaGCGCCCCCgcauuu -5'
5133 5' -55.4 NC_001798.1 + 153003 0.68 0.834542
Target:  5'- gGCGcGGGGcGGUCGCcGGGGCGg--- -3'
miRNA:   3'- gCGUaUUCU-CCAGCGcCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 15901 0.68 0.826074
Target:  5'- cCGCGggcGGGGUgGgaaGGGGGCGUAc- -3'
miRNA:   3'- -GCGUauuCUCCAgCg--CCCCCGCAUuu -5'
5133 5' -55.4 NC_001798.1 + 4203 0.68 0.820907
Target:  5'- gGCGUGgucugcggcgcuggcGGGGG-CGCGGGcGGCGUc-- -3'
miRNA:   3'- gCGUAU---------------UCUCCaGCGCCC-CCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 29900 0.68 0.817426
Target:  5'- uGCGgguuggGGGuGGUCGCGGGcGGUGg--- -3'
miRNA:   3'- gCGUa-----UUCuCCAGCGCCC-CCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 85816 0.68 0.808606
Target:  5'- gGCGaugacGGGGGGggGCGGGGGCGg--- -3'
miRNA:   3'- gCGUa----UUCUCCagCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 111640 0.69 0.799622
Target:  5'- uCGCGUcGGGGGcgcucggCGgGGGGGCGg--- -3'
miRNA:   3'- -GCGUAuUCUCCa------GCgCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 43973 0.69 0.799622
Target:  5'- gGCGU---GGGUCGUGGGGgauuGCGUAGGu -3'
miRNA:   3'- gCGUAuucUCCAGCGCCCC----CGCAUUU- -5'
5133 5' -55.4 NC_001798.1 + 153677 0.69 0.799622
Target:  5'- cCGCGggcGGGGaCGCGGGGGCc---- -3'
miRNA:   3'- -GCGUauuCUCCaGCGCCCCCGcauuu -5'
5133 5' -55.4 NC_001798.1 + 46521 0.69 0.781199
Target:  5'- gGCucgGUGAG-GGUCGgGGGGGUGg--- -3'
miRNA:   3'- gCG---UAUUCuCCAGCgCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 113740 0.69 0.771778
Target:  5'- uCGCGUucuaacGGGGGuGUgGCGGGGGgGUAu- -3'
miRNA:   3'- -GCGUA------UUCUC-CAgCGCCCCCgCAUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.