Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5134 | 5' | -55.7 | NC_001798.1 | + | 44207 | 0.66 | 0.933427 |
Target: 5'- gCGUGGUGAgGCcgcGCugCCCCaggGACa -3' miRNA: 3'- -GCAUCACUgUGu--CGugGGGGag-CUGg -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 109562 | 0.66 | 0.933427 |
Target: 5'- ----aUGGCGCGGUGgCCCCgagcgCGGCCc -3' miRNA: 3'- gcaucACUGUGUCGUgGGGGa----GCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 135091 | 0.66 | 0.933427 |
Target: 5'- --cGGUcGCGCgguGGCACCCCa-CGGCCa -3' miRNA: 3'- gcaUCAcUGUG---UCGUGGGGgaGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 32768 | 0.66 | 0.933427 |
Target: 5'- cCGUGGUcucgggaGCAgGGCGCgCCCgcgcCGGCCg -3' miRNA: 3'- -GCAUCAc------UGUgUCGUGgGGGa---GCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 52247 | 0.66 | 0.938285 |
Target: 5'- uCGUGGgGGCGCGccuGCACCCgCaCUCcGCCc -3' miRNA: 3'- -GCAUCaCUGUGU---CGUGGG-G-GAGcUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 143226 | 0.66 | 0.923008 |
Target: 5'- uCGUAuccGUGAgcugGCGGCGCCCCaguucgUCGAUCg -3' miRNA: 3'- -GCAU---CACUg---UGUCGUGGGGg-----AGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 138581 | 0.66 | 0.917446 |
Target: 5'- --gGGgggGGCACAGCACCaggcaCUCG-CCg -3' miRNA: 3'- gcaUCa--CUGUGUCGUGGgg---GAGCuGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 47870 | 0.67 | 0.892875 |
Target: 5'- cCGUGGgcgccggcgGGCGCucGCACgCCCCUCcccgcgGACCc -3' miRNA: 3'- -GCAUCa--------CUGUGu-CGUG-GGGGAG------CUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 53044 | 0.67 | 0.892875 |
Target: 5'- --cGG-GACGCGGCAUaCCUC-CGACCg -3' miRNA: 3'- gcaUCaCUGUGUCGUG-GGGGaGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 128299 | 0.67 | 0.892875 |
Target: 5'- ----cUGACGCGccGCGCCCCCcCGuCCg -3' miRNA: 3'- gcaucACUGUGU--CGUGGGGGaGCuGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 104648 | 0.67 | 0.899362 |
Target: 5'- aCGUgGGUGGC-CAGgGCCCCgUgcucguagCGGCCg -3' miRNA: 3'- -GCA-UCACUGuGUCgUGGGGgA--------GCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 2422 | 0.67 | 0.899362 |
Target: 5'- cCGgcGUGugGCuGgGCCCCggCGGCUg -3' miRNA: 3'- -GCauCACugUGuCgUGGGGgaGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 31203 | 0.67 | 0.899362 |
Target: 5'- -----cGAC-CGGCGCCCCCUgGcGCCc -3' miRNA: 3'- gcaucaCUGuGUCGUGGGGGAgC-UGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 14265 | 0.67 | 0.905621 |
Target: 5'- -----aGACACAGCcCCCCCaCGAUg -3' miRNA: 3'- gcaucaCUGUGUCGuGGGGGaGCUGg -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 70454 | 0.67 | 0.905621 |
Target: 5'- --cGGUGGCGCuccccgAG-ACCCCCgaggCGGCCu -3' miRNA: 3'- gcaUCACUGUG------UCgUGGGGGa---GCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 51173 | 0.67 | 0.905621 |
Target: 5'- gCGUccgAGgcccgGGCgGCGGCGCCCCCcCG-CCg -3' miRNA: 3'- -GCA---UCa----CUG-UGUCGUGGGGGaGCuGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 137356 | 0.66 | 0.909865 |
Target: 5'- gCGUuc-GACGCcccagcccugguccGGCGCaCCCCUCGGCg -3' miRNA: 3'- -GCAucaCUGUG--------------UCGUG-GGGGAGCUGg -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 124084 | 0.66 | 0.91165 |
Target: 5'- --aGGcGGCGCcuGCGCCCCgaCGGCCc -3' miRNA: 3'- gcaUCaCUGUGu-CGUGGGGgaGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 71134 | 0.66 | 0.917446 |
Target: 5'- gCGUGcGgacgGACGCGGC-CgUCUUCGACCc -3' miRNA: 3'- -GCAU-Ca---CUGUGUCGuGgGGGAGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 122363 | 0.66 | 0.917446 |
Target: 5'- gCGUGGggcgggcGACGCGccCGCCCCCcgCGGCUg -3' miRNA: 3'- -GCAUCa------CUGUGUc-GUGGGGGa-GCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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