miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 3' -53.9 NC_001798.1 + 2470 0.66 0.962441
Target:  5'- gGUCGGGGcCCUCGgcggGCCGG-CgGGUCa -3'
miRNA:   3'- gCAGCCUUaGGGGUa---UGGCCaG-CUAG- -5'
5135 3' -53.9 NC_001798.1 + 13696 0.66 0.971778
Target:  5'- aCGcCGGAGgucaaacgCCCCAUGCCGuGauacgCGAUg -3'
miRNA:   3'- -GCaGCCUUa-------GGGGUAUGGC-Ca----GCUAg -5'
5135 3' -53.9 NC_001798.1 + 22388 0.66 0.9589
Target:  5'- gGgggCGGAA-CCCCGgcgaGCCGGggcgcggcggcgUCGAUCg -3'
miRNA:   3'- gCa--GCCUUaGGGGUa---UGGCC------------AGCUAG- -5'
5135 3' -53.9 NC_001798.1 + 27918 0.69 0.877827
Target:  5'- cCGcCGGggUCCCCGccGCCGG--GGUCc -3'
miRNA:   3'- -GCaGCCuuAGGGGUa-UGGCCagCUAG- -5'
5135 3' -53.9 NC_001798.1 + 36401 0.66 0.968874
Target:  5'- gCGcCGGGGcCCCCcUGCCGGgcggggCGGUg -3'
miRNA:   3'- -GCaGCCUUaGGGGuAUGGCCa-----GCUAg -5'
5135 3' -53.9 NC_001798.1 + 38435 0.66 0.968874
Target:  5'- gGcCGGGG-CCCCAcauuuauCCGGUgGGUCa -3'
miRNA:   3'- gCaGCCUUaGGGGUau-----GGCCAgCUAG- -5'
5135 3' -53.9 NC_001798.1 + 39833 0.68 0.910744
Target:  5'- uCGUCGGc-UCCCCGccgcgcUGCCGGgCGAg- -3'
miRNA:   3'- -GCAGCCuuAGGGGU------AUGGCCaGCUag -5'
5135 3' -53.9 NC_001798.1 + 42699 0.71 0.777128
Target:  5'- gCGUCGGGgaaccaGUCCCCGUcgccgucgucgccACCGGcCGAg- -3'
miRNA:   3'- -GCAGCCU------UAGGGGUA-------------UGGCCaGCUag -5'
5135 3' -53.9 NC_001798.1 + 45480 0.68 0.922275
Target:  5'- gCGUCGGucccAGUCaCCCAcGCCGG-CGAc- -3'
miRNA:   3'- -GCAGCC----UUAG-GGGUaUGGCCaGCUag -5'
5135 3' -53.9 NC_001798.1 + 46772 0.69 0.904623
Target:  5'- -uUCGGAGUCCCCGcauucUGCCGGg----- -3'
miRNA:   3'- gcAGCCUUAGGGGU-----AUGGCCagcuag -5'
5135 3' -53.9 NC_001798.1 + 59008 0.72 0.75921
Target:  5'- gCG-CGGAGgaaCCCCAgGCCGGUgcuccCGAUCa -3'
miRNA:   3'- -GCaGCCUUa--GGGGUaUGGCCA-----GCUAG- -5'
5135 3' -53.9 NC_001798.1 + 74548 0.66 0.969174
Target:  5'- uGUCGGugugGUCCCCAggggggacggagaagGCuCGGgccCGGUCg -3'
miRNA:   3'- gCAGCCu---UAGGGGUa--------------UG-GCCa--GCUAG- -5'
5135 3' -53.9 NC_001798.1 + 84597 0.68 0.927152
Target:  5'- aGUCGG--UCCCgGUGCCGGUgccccgcCGAa- -3'
miRNA:   3'- gCAGCCuuAGGGgUAUGGCCA-------GCUag -5'
5135 3' -53.9 NC_001798.1 + 121473 0.66 0.971778
Target:  5'- gCGggCGGGcuguucGUCUCCcUGCCGGUCGcgUg -3'
miRNA:   3'- -GCa-GCCU------UAGGGGuAUGGCCAGCuaG- -5'
5135 3' -53.9 NC_001798.1 + 129689 0.68 0.927682
Target:  5'- gCGcCGGGG-CCCCAgUACCGGcgCGcAUCg -3'
miRNA:   3'- -GCaGCCUUaGGGGU-AUGGCCa-GC-UAG- -5'
5135 3' -53.9 NC_001798.1 + 130171 1.1 0.004723
Target:  5'- cCGUCGGAAUCCCCAUACCGGUCGAUCu -3'
miRNA:   3'- -GCAGCCUUAGGGGUAUGGCCAGCUAG- -5'
5135 3' -53.9 NC_001798.1 + 143372 0.69 0.898268
Target:  5'- cCGUCGaGAggCCCCAcgugcgcguCCGGUgCGGUCc -3'
miRNA:   3'- -GCAGC-CUuaGGGGUau-------GGCCA-GCUAG- -5'
5135 3' -53.9 NC_001798.1 + 143616 0.66 0.974482
Target:  5'- uGUCGGca-UCUUAUACCGaccaGUCGAUCg -3'
miRNA:   3'- gCAGCCuuaGGGGUAUGGC----CAGCUAG- -5'
5135 3' -53.9 NC_001798.1 + 147183 0.66 0.974482
Target:  5'- cCGggCGGAaggcGUCCCCcgcCCGG-CGGUCc -3'
miRNA:   3'- -GCa-GCCU----UAGGGGuauGGCCaGCUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.