Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5135 | 3' | -53.9 | NC_001798.1 | + | 2470 | 0.66 | 0.962441 |
Target: 5'- gGUCGGGGcCCUCGgcggGCCGG-CgGGUCa -3' miRNA: 3'- gCAGCCUUaGGGGUa---UGGCCaG-CUAG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 13696 | 0.66 | 0.971778 |
Target: 5'- aCGcCGGAGgucaaacgCCCCAUGCCGuGauacgCGAUg -3' miRNA: 3'- -GCaGCCUUa-------GGGGUAUGGC-Ca----GCUAg -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 22388 | 0.66 | 0.9589 |
Target: 5'- gGgggCGGAA-CCCCGgcgaGCCGGggcgcggcggcgUCGAUCg -3' miRNA: 3'- gCa--GCCUUaGGGGUa---UGGCC------------AGCUAG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 27918 | 0.69 | 0.877827 |
Target: 5'- cCGcCGGggUCCCCGccGCCGG--GGUCc -3' miRNA: 3'- -GCaGCCuuAGGGGUa-UGGCCagCUAG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 36401 | 0.66 | 0.968874 |
Target: 5'- gCGcCGGGGcCCCCcUGCCGGgcggggCGGUg -3' miRNA: 3'- -GCaGCCUUaGGGGuAUGGCCa-----GCUAg -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 38435 | 0.66 | 0.968874 |
Target: 5'- gGcCGGGG-CCCCAcauuuauCCGGUgGGUCa -3' miRNA: 3'- gCaGCCUUaGGGGUau-----GGCCAgCUAG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 39833 | 0.68 | 0.910744 |
Target: 5'- uCGUCGGc-UCCCCGccgcgcUGCCGGgCGAg- -3' miRNA: 3'- -GCAGCCuuAGGGGU------AUGGCCaGCUag -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 42699 | 0.71 | 0.777128 |
Target: 5'- gCGUCGGGgaaccaGUCCCCGUcgccgucgucgccACCGGcCGAg- -3' miRNA: 3'- -GCAGCCU------UAGGGGUA-------------UGGCCaGCUag -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 45480 | 0.68 | 0.922275 |
Target: 5'- gCGUCGGucccAGUCaCCCAcGCCGG-CGAc- -3' miRNA: 3'- -GCAGCC----UUAG-GGGUaUGGCCaGCUag -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 46772 | 0.69 | 0.904623 |
Target: 5'- -uUCGGAGUCCCCGcauucUGCCGGg----- -3' miRNA: 3'- gcAGCCUUAGGGGU-----AUGGCCagcuag -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 59008 | 0.72 | 0.75921 |
Target: 5'- gCG-CGGAGgaaCCCCAgGCCGGUgcuccCGAUCa -3' miRNA: 3'- -GCaGCCUUa--GGGGUaUGGCCA-----GCUAG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 74548 | 0.66 | 0.969174 |
Target: 5'- uGUCGGugugGUCCCCAggggggacggagaagGCuCGGgccCGGUCg -3' miRNA: 3'- gCAGCCu---UAGGGGUa--------------UG-GCCa--GCUAG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 84597 | 0.68 | 0.927152 |
Target: 5'- aGUCGG--UCCCgGUGCCGGUgccccgcCGAa- -3' miRNA: 3'- gCAGCCuuAGGGgUAUGGCCA-------GCUag -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 121473 | 0.66 | 0.971778 |
Target: 5'- gCGggCGGGcuguucGUCUCCcUGCCGGUCGcgUg -3' miRNA: 3'- -GCa-GCCU------UAGGGGuAUGGCCAGCuaG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 129689 | 0.68 | 0.927682 |
Target: 5'- gCGcCGGGG-CCCCAgUACCGGcgCGcAUCg -3' miRNA: 3'- -GCaGCCUUaGGGGU-AUGGCCa-GC-UAG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 130171 | 1.1 | 0.004723 |
Target: 5'- cCGUCGGAAUCCCCAUACCGGUCGAUCu -3' miRNA: 3'- -GCAGCCUUAGGGGUAUGGCCAGCUAG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 143372 | 0.69 | 0.898268 |
Target: 5'- cCGUCGaGAggCCCCAcgugcgcguCCGGUgCGGUCc -3' miRNA: 3'- -GCAGC-CUuaGGGGUau-------GGCCA-GCUAG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 143616 | 0.66 | 0.974482 |
Target: 5'- uGUCGGca-UCUUAUACCGaccaGUCGAUCg -3' miRNA: 3'- gCAGCCuuaGGGGUAUGGC----CAGCUAG- -5' |
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5135 | 3' | -53.9 | NC_001798.1 | + | 147183 | 0.66 | 0.974482 |
Target: 5'- cCGggCGGAaggcGUCCCCcgcCCGG-CGGUCc -3' miRNA: 3'- -GCa-GCCU----UAGGGGuauGGCCaGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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