Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 129415 | 1.09 | 0.002485 |
Target: 5'- uUCCGAUCGCCCUGAUCAUCACCCCCGu -3' miRNA: 3'- -AGGCUAGCGGGACUAGUAGUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 133471 | 0.72 | 0.563767 |
Target: 5'- gCCGA-CGCCCUGAgCGgcuGCCCCCc -3' miRNA: 3'- aGGCUaGCGGGACUaGUag-UGGGGGc -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 126469 | 0.71 | 0.612559 |
Target: 5'- gUCCGAgacggccaugaccUCGCCCc---CGUCGCCCCCc -3' miRNA: 3'- -AGGCU-------------AGCGGGacuaGUAGUGGGGGc -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 110492 | 0.7 | 0.66368 |
Target: 5'- gCCcAUCGCCac---CAUCGCCCCCGg -3' miRNA: 3'- aGGcUAGCGGgacuaGUAGUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 84198 | 0.7 | 0.673662 |
Target: 5'- gUCUGcucCGCCgUGAUCG-CGCCCCCc -3' miRNA: 3'- -AGGCua-GCGGgACUAGUaGUGGGGGc -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 71083 | 0.7 | 0.673662 |
Target: 5'- gCCGcGUCaGCCCgcGGUCGgcgugcgCGCCCCCGg -3' miRNA: 3'- aGGC-UAG-CGGGa-CUAGUa------GUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 30864 | 0.7 | 0.673662 |
Target: 5'- gUCCG--CGCCCUG-UCGccCACCCCCc -3' miRNA: 3'- -AGGCuaGCGGGACuAGUa-GUGGGGGc -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 119018 | 0.69 | 0.707306 |
Target: 5'- gCUGGUCGCCCgGggCAUCcgggaccucaaccccGaCCCCCGg -3' miRNA: 3'- aGGCUAGCGGGaCuaGUAG---------------U-GGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 81825 | 0.69 | 0.713179 |
Target: 5'- cCCGGUCGCCCc-GUCGcCGCUUCCGc -3' miRNA: 3'- aGGCUAGCGGGacUAGUaGUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 110017 | 0.69 | 0.722914 |
Target: 5'- -----aCGCCCUGAUCcgCGCCUUCGu -3' miRNA: 3'- aggcuaGCGGGACUAGuaGUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 46914 | 0.69 | 0.726788 |
Target: 5'- --gGAUCGCCCUGGgcccccacugacUCAUCGCCgcgaugacggggaaaCCCGc -3' miRNA: 3'- aggCUAGCGGGACU------------AGUAGUGG---------------GGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 81858 | 0.69 | 0.732574 |
Target: 5'- cCCGAccagcCGCCCaccccgGAgUCcgCGCCCCCGg -3' miRNA: 3'- aGGCUa----GCGGGa-----CU-AGuaGUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 32056 | 0.68 | 0.742151 |
Target: 5'- cCCGG-CGUCCgcggGcgCcgCGCCCCCGu -3' miRNA: 3'- aGGCUaGCGGGa---CuaGuaGUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 152652 | 0.68 | 0.751635 |
Target: 5'- gCCGGcgCgGCCCUGAguggugccCGCCCCCGg -3' miRNA: 3'- aGGCUa-G-CGGGACUagua----GUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 92144 | 0.68 | 0.769369 |
Target: 5'- cCCG-UCuGCCCccGGUCGUCuugccggGCCCCCGu -3' miRNA: 3'- aGGCuAG-CGGGa-CUAGUAG-------UGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 62476 | 0.68 | 0.769369 |
Target: 5'- cCCGGUCGUCCUccucggaGAUacUCACCCCg- -3' miRNA: 3'- aGGCUAGCGGGA-------CUAguAGUGGGGgc -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 70122 | 0.68 | 0.779446 |
Target: 5'- cCCGG-CGCCCgccggCAUgACCCCCc -3' miRNA: 3'- aGGCUaGCGGGacua-GUAgUGGGGGc -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 59025 | 0.68 | 0.779446 |
Target: 5'- gCCGGU-GCuCCcGAUCAcgaaCGCCCCCGa -3' miRNA: 3'- aGGCUAgCG-GGaCUAGUa---GUGGGGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 95586 | 0.68 | 0.779446 |
Target: 5'- -gCGGagGCCCUGGUCAgccagcucggCGCCgCCGg -3' miRNA: 3'- agGCUagCGGGACUAGUa---------GUGGgGGC- -5' |
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5136 | 3' | -57.6 | NC_001798.1 | + | 137358 | 0.68 | 0.788473 |
Target: 5'- gUUCGAcgccccaGCCCUGGUCcggcgCACCCCuCGg -3' miRNA: 3'- -AGGCUag-----CGGGACUAGua---GUGGGG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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