miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 3' -57.6 NC_001798.1 + 129415 1.09 0.002485
Target:  5'- uUCCGAUCGCCCUGAUCAUCACCCCCGu -3'
miRNA:   3'- -AGGCUAGCGGGACUAGUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 133471 0.72 0.563767
Target:  5'- gCCGA-CGCCCUGAgCGgcuGCCCCCc -3'
miRNA:   3'- aGGCUaGCGGGACUaGUag-UGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 126469 0.71 0.612559
Target:  5'- gUCCGAgacggccaugaccUCGCCCc---CGUCGCCCCCc -3'
miRNA:   3'- -AGGCU-------------AGCGGGacuaGUAGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 110492 0.7 0.66368
Target:  5'- gCCcAUCGCCac---CAUCGCCCCCGg -3'
miRNA:   3'- aGGcUAGCGGgacuaGUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 84198 0.7 0.673662
Target:  5'- gUCUGcucCGCCgUGAUCG-CGCCCCCc -3'
miRNA:   3'- -AGGCua-GCGGgACUAGUaGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 71083 0.7 0.673662
Target:  5'- gCCGcGUCaGCCCgcGGUCGgcgugcgCGCCCCCGg -3'
miRNA:   3'- aGGC-UAG-CGGGa-CUAGUa------GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 30864 0.7 0.673662
Target:  5'- gUCCG--CGCCCUG-UCGccCACCCCCc -3'
miRNA:   3'- -AGGCuaGCGGGACuAGUa-GUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 119018 0.69 0.707306
Target:  5'- gCUGGUCGCCCgGggCAUCcgggaccucaaccccGaCCCCCGg -3'
miRNA:   3'- aGGCUAGCGGGaCuaGUAG---------------U-GGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 81825 0.69 0.713179
Target:  5'- cCCGGUCGCCCc-GUCGcCGCUUCCGc -3'
miRNA:   3'- aGGCUAGCGGGacUAGUaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 110017 0.69 0.722914
Target:  5'- -----aCGCCCUGAUCcgCGCCUUCGu -3'
miRNA:   3'- aggcuaGCGGGACUAGuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 46914 0.69 0.726788
Target:  5'- --gGAUCGCCCUGGgcccccacugacUCAUCGCCgcgaugacggggaaaCCCGc -3'
miRNA:   3'- aggCUAGCGGGACU------------AGUAGUGG---------------GGGC- -5'
5136 3' -57.6 NC_001798.1 + 81858 0.69 0.732574
Target:  5'- cCCGAccagcCGCCCaccccgGAgUCcgCGCCCCCGg -3'
miRNA:   3'- aGGCUa----GCGGGa-----CU-AGuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 32056 0.68 0.742151
Target:  5'- cCCGG-CGUCCgcggGcgCcgCGCCCCCGu -3'
miRNA:   3'- aGGCUaGCGGGa---CuaGuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 152652 0.68 0.751635
Target:  5'- gCCGGcgCgGCCCUGAguggugccCGCCCCCGg -3'
miRNA:   3'- aGGCUa-G-CGGGACUagua----GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 92144 0.68 0.769369
Target:  5'- cCCG-UCuGCCCccGGUCGUCuugccggGCCCCCGu -3'
miRNA:   3'- aGGCuAG-CGGGa-CUAGUAG-------UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 62476 0.68 0.769369
Target:  5'- cCCGGUCGUCCUccucggaGAUacUCACCCCg- -3'
miRNA:   3'- aGGCUAGCGGGA-------CUAguAGUGGGGgc -5'
5136 3' -57.6 NC_001798.1 + 70122 0.68 0.779446
Target:  5'- cCCGG-CGCCCgccggCAUgACCCCCc -3'
miRNA:   3'- aGGCUaGCGGGacua-GUAgUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 59025 0.68 0.779446
Target:  5'- gCCGGU-GCuCCcGAUCAcgaaCGCCCCCGa -3'
miRNA:   3'- aGGCUAgCG-GGaCUAGUa---GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 95586 0.68 0.779446
Target:  5'- -gCGGagGCCCUGGUCAgccagcucggCGCCgCCGg -3'
miRNA:   3'- agGCUagCGGGACUAGUa---------GUGGgGGC- -5'
5136 3' -57.6 NC_001798.1 + 137358 0.68 0.788473
Target:  5'- gUUCGAcgccccaGCCCUGGUCcggcgCACCCCuCGg -3'
miRNA:   3'- -AGGCUag-----CGGGACUAGua---GUGGGG-GC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.