miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 3' -57.6 NC_001798.1 + 104 0.66 0.877162
Target:  5'- cCCGcgCGCCCccuucccCGUCccuCCCCCGg -3'
miRNA:   3'- aGGCuaGCGGGacua---GUAGu--GGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 1482 0.67 0.823151
Target:  5'- gCCGggCGCCaUGG-CGUCGCCCgCGc -3'
miRNA:   3'- aGGCuaGCGGgACUaGUAGUGGGgGC- -5'
5136 3' -57.6 NC_001798.1 + 15112 0.66 0.877162
Target:  5'- gCCGGUgGCgCUG-UCGUCGUCCUCGg -3'
miRNA:   3'- aGGCUAgCGgGACuAGUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 23061 0.66 0.870033
Target:  5'- gCCGuUCGCac-GAUCccGUCGCCCCCc -3'
miRNA:   3'- aGGCuAGCGggaCUAG--UAGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 30864 0.7 0.673662
Target:  5'- gUCCG--CGCCCUG-UCGccCACCCCCc -3'
miRNA:   3'- -AGGCuaGCGGGACuAGUa-GUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 31578 0.67 0.806115
Target:  5'- gCCGcgCGCCCccgcgcGGcCGUCGCCCCgCGc -3'
miRNA:   3'- aGGCuaGCGGGa-----CUaGUAGUGGGG-GC- -5'
5136 3' -57.6 NC_001798.1 + 31705 0.66 0.855164
Target:  5'- aCCGcgCGCCCcGGUCG-CGCaugaCCCa -3'
miRNA:   3'- aGGCuaGCGGGaCUAGUaGUGg---GGGc -5'
5136 3' -57.6 NC_001798.1 + 32056 0.68 0.742151
Target:  5'- cCCGG-CGUCCgcggGcgCcgCGCCCCCGu -3'
miRNA:   3'- aGGCUaGCGGGa---CuaGuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 35189 0.66 0.877162
Target:  5'- cUCGAUCGgcggcgggcCCCUGcguUCGUugcugccgCGCCCCCGg -3'
miRNA:   3'- aGGCUAGC---------GGGACu--AGUA--------GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 37350 0.66 0.860459
Target:  5'- cUCgGAUCGCCCccccaccuacgccaUGGUCAUgGCCgcaugUCCGa -3'
miRNA:   3'- -AGgCUAGCGGG--------------ACUAGUAgUGG-----GGGC- -5'
5136 3' -57.6 NC_001798.1 + 38436 0.66 0.877864
Target:  5'- gCCGGg-GCCCcacauuuauccggugGGUCAUCGCCCUCc -3'
miRNA:   3'- aGGCUagCGGGa--------------CUAGUAGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 46914 0.69 0.726788
Target:  5'- --gGAUCGCCCUGGgcccccacugacUCAUCGCCgcgaugacggggaaaCCCGc -3'
miRNA:   3'- aggCUAGCGGGACU------------AGUAGUGG---------------GGGC- -5'
5136 3' -57.6 NC_001798.1 + 55142 0.67 0.83952
Target:  5'- gCCuGUCGCCCaUGccCGccCGCCCCCGg -3'
miRNA:   3'- aGGcUAGCGGG-ACuaGUa-GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 59025 0.68 0.779446
Target:  5'- gCCGGU-GCuCCcGAUCAcgaaCGCCCCCGa -3'
miRNA:   3'- aGGCUAgCG-GGaCUAGUa---GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 62476 0.68 0.769369
Target:  5'- cCCGGUCGUCCUccucggaGAUacUCACCCCg- -3'
miRNA:   3'- aGGCUAGCGGGA-------CUAguAGUGGGGgc -5'
5136 3' -57.6 NC_001798.1 + 70122 0.68 0.779446
Target:  5'- cCCGG-CGCCCgccggCAUgACCCCCc -3'
miRNA:   3'- aGGCUaGCGGGacua-GUAgUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 71083 0.7 0.673662
Target:  5'- gCCGcGUCaGCCCgcGGUCGgcgugcgCGCCCCCGg -3'
miRNA:   3'- aGGC-UAG-CGGGa-CUAGUa------GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 75789 0.67 0.797366
Target:  5'- cCCGAaCaCCCUGu---UCGCCCCCGc -3'
miRNA:   3'- aGGCUaGcGGGACuaguAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 77872 0.66 0.847436
Target:  5'- gCCGAggcggucacccUCGCCCUGGauacggccuUCGcguuuaaccccUaCACCCCCGa -3'
miRNA:   3'- aGGCU-----------AGCGGGACU---------AGU-----------A-GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 79403 0.66 0.855164
Target:  5'- gUCCGcgcccgCGCCCcugcucguUGAUCuucgCGCCCUCGa -3'
miRNA:   3'- -AGGCua----GCGGG--------ACUAGua--GUGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.