miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 3' -57.6 NC_001798.1 + 129415 1.09 0.002485
Target:  5'- uUCCGAUCGCCCUGAUCAUCACCCCCGu -3'
miRNA:   3'- -AGGCUAGCGGGACUAGUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 119477 0.66 0.855164
Target:  5'- aUCCGGcgacaUgGCCCcGGUUAUCcgcuACCCCUGa -3'
miRNA:   3'- -AGGCU-----AgCGGGaCUAGUAG----UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 82322 0.66 0.855164
Target:  5'- cCCGGUUGCCCg---CcgC-CCCCCa -3'
miRNA:   3'- aGGCUAGCGGGacuaGuaGuGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 123433 0.66 0.855164
Target:  5'- aCCGGggCGCCCcccccGAcgCGcgCGCCCCCGa -3'
miRNA:   3'- aGGCUa-GCGGGa----CUa-GUa-GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 79403 0.66 0.855164
Target:  5'- gUCCGcgcccgCGCCCcugcucguUGAUCuucgCGCCCUCGa -3'
miRNA:   3'- -AGGCua----GCGGG--------ACUAGua--GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 31705 0.66 0.855164
Target:  5'- aCCGcgCGCCCcGGUCG-CGCaugaCCCa -3'
miRNA:   3'- aGGCuaGCGGGaCUAGUaGUGg---GGGc -5'
5136 3' -57.6 NC_001798.1 + 97311 0.66 0.85055
Target:  5'- gUgGA-CGCCCUGAUCAUCGgcggccaggcgacguCgCCCGa -3'
miRNA:   3'- aGgCUaGCGGGACUAGUAGU---------------GgGGGC- -5'
5136 3' -57.6 NC_001798.1 + 150880 0.66 0.847436
Target:  5'- uUCCGcggGUCGCCCccg-CAccgcCGCCCCCGc -3'
miRNA:   3'- -AGGC---UAGCGGGacuaGUa---GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 77872 0.66 0.847436
Target:  5'- gCCGAggcggucacccUCGCCCUGGauacggccuUCGcguuuaaccccUaCACCCCCGa -3'
miRNA:   3'- aGGCU-----------AGCGGGACU---------AGU-----------A-GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 145546 0.66 0.855164
Target:  5'- cCCGGcCGCCCgcGUCGcgccggCGCCCCCu -3'
miRNA:   3'- aGGCUaGCGGGacUAGUa-----GUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 37350 0.66 0.860459
Target:  5'- cUCgGAUCGCCCccccaccuacgccaUGGUCAUgGCCgcaugUCCGa -3'
miRNA:   3'- -AGgCUAGCGGG--------------ACUAGUAgUGG-----GGGC- -5'
5136 3' -57.6 NC_001798.1 + 88507 0.66 0.870033
Target:  5'- aCCaGAUccaCGCCCuUGAUgagCAUCuuGCCCCCGc -3'
miRNA:   3'- aGG-CUA---GCGGG-ACUA---GUAG--UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 154442 0.66 0.877162
Target:  5'- cCCGcgCGCCCccuucccCGUCccuCCCCCGg -3'
miRNA:   3'- aGGCuaGCGGGacua---GUAGu--GGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 150695 0.66 0.877162
Target:  5'- cCCGcgCG-CCUGcgCG-CGCCCCCc -3'
miRNA:   3'- aGGCuaGCgGGACuaGUaGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 101439 0.66 0.877162
Target:  5'- aCCGGUCGCUUUc--CA-CACCCCCu -3'
miRNA:   3'- aGGCUAGCGGGAcuaGUaGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 35189 0.66 0.877162
Target:  5'- cUCGAUCGgcggcgggcCCCUGcguUCGUugcugccgCGCCCCCGg -3'
miRNA:   3'- aGGCUAGC---------GGGACu--AGUA--------GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 15112 0.66 0.877162
Target:  5'- gCCGGUgGCgCUG-UCGUCGUCCUCGg -3'
miRNA:   3'- aGGCUAgCGgGACuAGUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 104 0.66 0.877162
Target:  5'- cCCGcgCGCCCccuucccCGUCccuCCCCCGg -3'
miRNA:   3'- aGGCuaGCGGGacua---GUAGu--GGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 23061 0.66 0.870033
Target:  5'- gCCGuUCGCac-GAUCccGUCGCCCCCc -3'
miRNA:   3'- aGGCuAGCGggaCUAG--UAGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 107649 0.66 0.870033
Target:  5'- gUCGAgaCGCCCUGuugCGccUCACCgCCGg -3'
miRNA:   3'- aGGCUa-GCGGGACua-GU--AGUGGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.