miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 3' -57.6 NC_001798.1 + 134756 0.66 0.845081
Target:  5'- gCUGGUCGCCCucuuccggcagUGG-CAUaccacgguccacgcCGCCCCCGg -3'
miRNA:   3'- aGGCUAGCGGG-----------ACUaGUA--------------GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 134997 0.67 0.83952
Target:  5'- cCCGcggugggCGCCagGGUCGUCcuGCCCCCGc -3'
miRNA:   3'- aGGCua-----GCGGgaCUAGUAG--UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 55142 0.67 0.83952
Target:  5'- gCCuGUCGCCCaUGccCGccCGCCCCCGg -3'
miRNA:   3'- aGGcUAGCGGG-ACuaGUa-GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 1482 0.67 0.823151
Target:  5'- gCCGggCGCCaUGG-CGUCGCCCgCGc -3'
miRNA:   3'- aGGCuaGCGGgACUaGUAGUGGGgGC- -5'
5136 3' -57.6 NC_001798.1 + 96154 0.67 0.814713
Target:  5'- gCCGGgugacUCGCCaUGGcggCcgCGCCCCCGg -3'
miRNA:   3'- aGGCU-----AGCGGgACUa--GuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 113447 0.67 0.814713
Target:  5'- --gGAUCGCCUgccGUUGUCGCCaCCCGu -3'
miRNA:   3'- aggCUAGCGGGac-UAGUAGUGG-GGGC- -5'
5136 3' -57.6 NC_001798.1 + 116582 0.67 0.814713
Target:  5'- -aUGGUgGUCCcGGagAUCGCCCCCGg -3'
miRNA:   3'- agGCUAgCGGGaCUagUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 31578 0.67 0.806115
Target:  5'- gCCGcgCGCCCccgcgcGGcCGUCGCCCCgCGc -3'
miRNA:   3'- aGGCuaGCGGGa-----CUaGUAGUGGGG-GC- -5'
5136 3' -57.6 NC_001798.1 + 116860 0.67 0.806115
Target:  5'- gCCGG-CGUgCUGcUCAUgGCCCCCc -3'
miRNA:   3'- aGGCUaGCGgGACuAGUAgUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 75789 0.67 0.797366
Target:  5'- cCCGAaCaCCCUGu---UCGCCCCCGc -3'
miRNA:   3'- aGGCUaGcGGGACuaguAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 137358 0.68 0.788473
Target:  5'- gUUCGAcgccccaGCCCUGGUCcggcgCACCCCuCGg -3'
miRNA:   3'- -AGGCUag-----CGGGACUAGua---GUGGGG-GC- -5'
5136 3' -57.6 NC_001798.1 + 79883 0.68 0.788473
Target:  5'- gCCGAgcuguacgUCGCCCUcGUCGcCACCaCCCu -3'
miRNA:   3'- aGGCU--------AGCGGGAcUAGUaGUGG-GGGc -5'
5136 3' -57.6 NC_001798.1 + 149333 0.68 0.788473
Target:  5'- aCCaGggUGCCCUGGUCAaagagcaugUUGCCCaCCGg -3'
miRNA:   3'- aGG-CuaGCGGGACUAGU---------AGUGGG-GGC- -5'
5136 3' -57.6 NC_001798.1 + 125348 0.68 0.788473
Target:  5'- -gUGGUCGCCCccaaaGUCA-CGCCCCCu -3'
miRNA:   3'- agGCUAGCGGGac---UAGUaGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 70122 0.68 0.779446
Target:  5'- cCCGG-CGCCCgccggCAUgACCCCCc -3'
miRNA:   3'- aGGCUaGCGGGacua-GUAgUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 59025 0.68 0.779446
Target:  5'- gCCGGU-GCuCCcGAUCAcgaaCGCCCCCGa -3'
miRNA:   3'- aGGCUAgCG-GGaCUAGUa---GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 95586 0.68 0.779446
Target:  5'- -gCGGagGCCCUGGUCAgccagcucggCGCCgCCGg -3'
miRNA:   3'- agGCUagCGGGACUAGUa---------GUGGgGGC- -5'
5136 3' -57.6 NC_001798.1 + 92144 0.68 0.769369
Target:  5'- cCCG-UCuGCCCccGGUCGUCuugccggGCCCCCGu -3'
miRNA:   3'- aGGCuAG-CGGGa-CUAGUAG-------UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 62476 0.68 0.769369
Target:  5'- cCCGGUCGUCCUccucggaGAUacUCACCCCg- -3'
miRNA:   3'- aGGCUAGCGGGA-------CUAguAGUGGGGgc -5'
5136 3' -57.6 NC_001798.1 + 152652 0.68 0.751635
Target:  5'- gCCGGcgCgGCCCUGAguggugccCGCCCCCGg -3'
miRNA:   3'- aGGCUa-G-CGGGACUagua----GUGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.