miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 3' -55.2 NC_001798.1 + 126351 0.66 0.939945
Target:  5'- uCCggGAGCGgcuUCGCGCgGgaCUgUCCCGa -3'
miRNA:   3'- -GGaaCUCGC---AGCGUGgUa-GAgAGGGC- -5'
5137 3' -55.2 NC_001798.1 + 87259 0.66 0.930131
Target:  5'- uCUUUGAGCacCGCACCuuUCUggcCUCCCu -3'
miRNA:   3'- -GGAACUCGcaGCGUGGu-AGA---GAGGGc -5'
5137 3' -55.2 NC_001798.1 + 137749 0.67 0.907674
Target:  5'- aUCUUGaAGCaG-CGCACCAgcUCgugCUCCCa -3'
miRNA:   3'- -GGAAC-UCG-CaGCGUGGU--AGa--GAGGGc -5'
5137 3' -55.2 NC_001798.1 + 4599 0.67 0.902104
Target:  5'- ---cGAGCGggccgcuucuucuugCGCGCCGUCgcgCUCCgGg -3'
miRNA:   3'- ggaaCUCGCa--------------GCGUGGUAGa--GAGGgC- -5'
5137 3' -55.2 NC_001798.1 + 117785 0.67 0.895044
Target:  5'- cCCgUGGGCGUCGCAgCggUUCUCguaCGg -3'
miRNA:   3'- -GGaACUCGCAGCGUgGuaGAGAGg--GC- -5'
5137 3' -55.2 NC_001798.1 + 43265 0.68 0.888388
Target:  5'- gCCggGGGCGUCGUGCCcugCUgCUCCg- -3'
miRNA:   3'- -GGaaCUCGCAGCGUGGua-GA-GAGGgc -5'
5137 3' -55.2 NC_001798.1 + 149243 0.68 0.887029
Target:  5'- cCCgcggGGGCGUCGCcgGCCGgcgCgggcgcgcccugCUCCCGa -3'
miRNA:   3'- -GGaa--CUCGCAGCG--UGGUa--Ga-----------GAGGGC- -5'
5137 3' -55.2 NC_001798.1 + 122272 0.69 0.835815
Target:  5'- gCUgugGAGcCGUCGCuCCAUCUCcguggUCCUGc -3'
miRNA:   3'- gGAa--CUC-GCAGCGuGGUAGAG-----AGGGC- -5'
5137 3' -55.2 NC_001798.1 + 24492 0.7 0.801613
Target:  5'- gCC-UGAGCGcCGCGCCcgC-CUCCgCGc -3'
miRNA:   3'- -GGaACUCGCaGCGUGGuaGaGAGG-GC- -5'
5137 3' -55.2 NC_001798.1 + 145550 0.7 0.774343
Target:  5'- gCCgcccGCGUCGCGCCggCgccccCUCCCGg -3'
miRNA:   3'- -GGaacuCGCAGCGUGGuaGa----GAGGGC- -5'
5137 3' -55.2 NC_001798.1 + 129115 1.11 0.00303
Target:  5'- aCCUUGAGCGUCGCACCAUCUCUCCCGu -3'
miRNA:   3'- -GGAACUCGCAGCGUGGUAGAGAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.