Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5137 | 3' | -55.2 | NC_001798.1 | + | 126351 | 0.66 | 0.939945 |
Target: 5'- uCCggGAGCGgcuUCGCGCgGgaCUgUCCCGa -3' miRNA: 3'- -GGaaCUCGC---AGCGUGgUa-GAgAGGGC- -5' |
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5137 | 3' | -55.2 | NC_001798.1 | + | 87259 | 0.66 | 0.930131 |
Target: 5'- uCUUUGAGCacCGCACCuuUCUggcCUCCCu -3' miRNA: 3'- -GGAACUCGcaGCGUGGu-AGA---GAGGGc -5' |
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5137 | 3' | -55.2 | NC_001798.1 | + | 137749 | 0.67 | 0.907674 |
Target: 5'- aUCUUGaAGCaG-CGCACCAgcUCgugCUCCCa -3' miRNA: 3'- -GGAAC-UCG-CaGCGUGGU--AGa--GAGGGc -5' |
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5137 | 3' | -55.2 | NC_001798.1 | + | 4599 | 0.67 | 0.902104 |
Target: 5'- ---cGAGCGggccgcuucuucuugCGCGCCGUCgcgCUCCgGg -3' miRNA: 3'- ggaaCUCGCa--------------GCGUGGUAGa--GAGGgC- -5' |
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5137 | 3' | -55.2 | NC_001798.1 | + | 117785 | 0.67 | 0.895044 |
Target: 5'- cCCgUGGGCGUCGCAgCggUUCUCguaCGg -3' miRNA: 3'- -GGaACUCGCAGCGUgGuaGAGAGg--GC- -5' |
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5137 | 3' | -55.2 | NC_001798.1 | + | 43265 | 0.68 | 0.888388 |
Target: 5'- gCCggGGGCGUCGUGCCcugCUgCUCCg- -3' miRNA: 3'- -GGaaCUCGCAGCGUGGua-GA-GAGGgc -5' |
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5137 | 3' | -55.2 | NC_001798.1 | + | 149243 | 0.68 | 0.887029 |
Target: 5'- cCCgcggGGGCGUCGCcgGCCGgcgCgggcgcgcccugCUCCCGa -3' miRNA: 3'- -GGaa--CUCGCAGCG--UGGUa--Ga-----------GAGGGC- -5' |
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5137 | 3' | -55.2 | NC_001798.1 | + | 122272 | 0.69 | 0.835815 |
Target: 5'- gCUgugGAGcCGUCGCuCCAUCUCcguggUCCUGc -3' miRNA: 3'- gGAa--CUC-GCAGCGuGGUAGAG-----AGGGC- -5' |
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5137 | 3' | -55.2 | NC_001798.1 | + | 24492 | 0.7 | 0.801613 |
Target: 5'- gCC-UGAGCGcCGCGCCcgC-CUCCgCGc -3' miRNA: 3'- -GGaACUCGCaGCGUGGuaGaGAGG-GC- -5' |
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5137 | 3' | -55.2 | NC_001798.1 | + | 145550 | 0.7 | 0.774343 |
Target: 5'- gCCgcccGCGUCGCGCCggCgccccCUCCCGg -3' miRNA: 3'- -GGaacuCGCAGCGUGGuaGa----GAGGGC- -5' |
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5137 | 3' | -55.2 | NC_001798.1 | + | 129115 | 1.11 | 0.00303 |
Target: 5'- aCCUUGAGCGUCGCACCAUCUCUCCCGu -3' miRNA: 3'- -GGAACUCGCAGCGUGGUAGAGAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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