miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 129152 1.1 0.000814
Target:  5'- cUCCGGGGAGCUGGUUCGCCGCGAGCCc -3'
miRNA:   3'- -AGGCCCCUCGACCAAGCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 27284 0.78 0.145225
Target:  5'- -gCGGGGGGgaGGggCuGCCGCGAGCUc -3'
miRNA:   3'- agGCCCCUCgaCCaaG-CGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 113306 0.77 0.164071
Target:  5'- gCCGcuGGAGCUGGUg-GCCGCGGGCa -3'
miRNA:   3'- aGGCc-CCUCGACCAagCGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 86448 0.77 0.16567
Target:  5'- cCCGGGGAcggggGCcGGUUCgugagccugcuucggGCCGCGGGCCc -3'
miRNA:   3'- aGGCCCCU-----CGaCCAAG---------------CGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 97610 0.76 0.19881
Target:  5'- gCCGGaGAGCUGGggcgacaUCGCgaCGCGGGCCg -3'
miRNA:   3'- aGGCCcCUCGACCa------AGCG--GCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 66859 0.75 0.213411
Target:  5'- uUCCGGGGAGUcgccGGggCGCCG-GGGCUu -3'
miRNA:   3'- -AGGCCCCUCGa---CCaaGCGGCgCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 132202 0.75 0.228923
Target:  5'- cUUCGGGGAGCUGGa--GgCGCGccuGGCCg -3'
miRNA:   3'- -AGGCCCCUCGACCaagCgGCGC---UCGG- -5'
5137 5' -61.8 NC_001798.1 + 93287 0.75 0.234302
Target:  5'- gUCGGGGcguacCUGGcgcgCGCCGCGGGCCu -3'
miRNA:   3'- aGGCCCCuc---GACCaa--GCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 2264 0.74 0.245378
Target:  5'- gCCGGGGGGCgGGgcggCGCagCGCGcGGCCa -3'
miRNA:   3'- aGGCCCCUCGaCCaa--GCG--GCGC-UCGG- -5'
5137 5' -61.8 NC_001798.1 + 43366 0.74 0.251077
Target:  5'- cCCGGGGGuuGUUGGUgCGaaCGCGGGCCa -3'
miRNA:   3'- aGGCCCCU--CGACCAaGCg-GCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 154073 0.73 0.281218
Target:  5'- gCCGGGGcgcggcacGGCUGGagCGCCGgGgcgcGGCCg -3'
miRNA:   3'- aGGCCCC--------UCGACCaaGCGGCgC----UCGG- -5'
5137 5' -61.8 NC_001798.1 + 16036 0.73 0.287581
Target:  5'- cUCUGGGGAGCaaaagcgacgcgUGGUaggUCGCUGgGGGCg -3'
miRNA:   3'- -AGGCCCCUCG------------ACCA---AGCGGCgCUCGg -5'
5137 5' -61.8 NC_001798.1 + 6373 0.73 0.300644
Target:  5'- gCCGGGGGGCcGGgggGCCGgGGGgCCg -3'
miRNA:   3'- aGGCCCCUCGaCCaagCGGCgCUC-GG- -5'
5137 5' -61.8 NC_001798.1 + 147501 0.73 0.307346
Target:  5'- cUCCGGGGGGggGGggCGCCuGCGuguGUCu -3'
miRNA:   3'- -AGGCCCCUCgaCCaaGCGG-CGCu--CGG- -5'
5137 5' -61.8 NC_001798.1 + 19876 0.73 0.313475
Target:  5'- gUUCGGcGGAGCUGGUaUCGgcgaccaCCGCGgacAGCCa -3'
miRNA:   3'- -AGGCC-CCUCGACCA-AGC-------GGCGC---UCGG- -5'
5137 5' -61.8 NC_001798.1 + 3005 0.73 0.314162
Target:  5'- cCCGGGc-GCgGGggCGCgGCGGGCCg -3'
miRNA:   3'- aGGCCCcuCGaCCaaGCGgCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 150210 0.72 0.33529
Target:  5'- aCCGGGGGuGUUGGU--GCCGCGGGg- -3'
miRNA:   3'- aGGCCCCU-CGACCAagCGGCGCUCgg -5'
5137 5' -61.8 NC_001798.1 + 150842 0.72 0.34256
Target:  5'- gCCaGGGGGCgccGGUcgggUCGCgGCGGGCUg -3'
miRNA:   3'- aGGcCCCUCGa--CCA----AGCGgCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 61276 0.72 0.347716
Target:  5'- cCCGGgauagcgucuuguuGGAGCggGGUcgUCGCCGC-AGCCa -3'
miRNA:   3'- aGGCC--------------CCUCGa-CCA--AGCGGCGcUCGG- -5'
5137 5' -61.8 NC_001798.1 + 85995 0.72 0.357438
Target:  5'- gCCGGGGcGCUGG--CGCagggggGUGAGCCg -3'
miRNA:   3'- aGGCCCCuCGACCaaGCGg-----CGCUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.