Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5137 | 5' | -61.8 | NC_001798.1 | + | 129152 | 1.1 | 0.000814 |
Target: 5'- cUCCGGGGAGCUGGUUCGCCGCGAGCCc -3' miRNA: 3'- -AGGCCCCUCGACCAAGCGGCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 27284 | 0.78 | 0.145225 |
Target: 5'- -gCGGGGGGgaGGggCuGCCGCGAGCUc -3' miRNA: 3'- agGCCCCUCgaCCaaG-CGGCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 113306 | 0.77 | 0.164071 |
Target: 5'- gCCGcuGGAGCUGGUg-GCCGCGGGCa -3' miRNA: 3'- aGGCc-CCUCGACCAagCGGCGCUCGg -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 86448 | 0.77 | 0.16567 |
Target: 5'- cCCGGGGAcggggGCcGGUUCgugagccugcuucggGCCGCGGGCCc -3' miRNA: 3'- aGGCCCCU-----CGaCCAAG---------------CGGCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 97610 | 0.76 | 0.19881 |
Target: 5'- gCCGGaGAGCUGGggcgacaUCGCgaCGCGGGCCg -3' miRNA: 3'- aGGCCcCUCGACCa------AGCG--GCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 66859 | 0.75 | 0.213411 |
Target: 5'- uUCCGGGGAGUcgccGGggCGCCG-GGGCUu -3' miRNA: 3'- -AGGCCCCUCGa---CCaaGCGGCgCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 132202 | 0.75 | 0.228923 |
Target: 5'- cUUCGGGGAGCUGGa--GgCGCGccuGGCCg -3' miRNA: 3'- -AGGCCCCUCGACCaagCgGCGC---UCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 93287 | 0.75 | 0.234302 |
Target: 5'- gUCGGGGcguacCUGGcgcgCGCCGCGGGCCu -3' miRNA: 3'- aGGCCCCuc---GACCaa--GCGGCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 2264 | 0.74 | 0.245378 |
Target: 5'- gCCGGGGGGCgGGgcggCGCagCGCGcGGCCa -3' miRNA: 3'- aGGCCCCUCGaCCaa--GCG--GCGC-UCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 43366 | 0.74 | 0.251077 |
Target: 5'- cCCGGGGGuuGUUGGUgCGaaCGCGGGCCa -3' miRNA: 3'- aGGCCCCU--CGACCAaGCg-GCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 154073 | 0.73 | 0.281218 |
Target: 5'- gCCGGGGcgcggcacGGCUGGagCGCCGgGgcgcGGCCg -3' miRNA: 3'- aGGCCCC--------UCGACCaaGCGGCgC----UCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 16036 | 0.73 | 0.287581 |
Target: 5'- cUCUGGGGAGCaaaagcgacgcgUGGUaggUCGCUGgGGGCg -3' miRNA: 3'- -AGGCCCCUCG------------ACCA---AGCGGCgCUCGg -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 6373 | 0.73 | 0.300644 |
Target: 5'- gCCGGGGGGCcGGgggGCCGgGGGgCCg -3' miRNA: 3'- aGGCCCCUCGaCCaagCGGCgCUC-GG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 147501 | 0.73 | 0.307346 |
Target: 5'- cUCCGGGGGGggGGggCGCCuGCGuguGUCu -3' miRNA: 3'- -AGGCCCCUCgaCCaaGCGG-CGCu--CGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 19876 | 0.73 | 0.313475 |
Target: 5'- gUUCGGcGGAGCUGGUaUCGgcgaccaCCGCGgacAGCCa -3' miRNA: 3'- -AGGCC-CCUCGACCA-AGC-------GGCGC---UCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 3005 | 0.73 | 0.314162 |
Target: 5'- cCCGGGc-GCgGGggCGCgGCGGGCCg -3' miRNA: 3'- aGGCCCcuCGaCCaaGCGgCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 150210 | 0.72 | 0.33529 |
Target: 5'- aCCGGGGGuGUUGGU--GCCGCGGGg- -3' miRNA: 3'- aGGCCCCU-CGACCAagCGGCGCUCgg -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 150842 | 0.72 | 0.34256 |
Target: 5'- gCCaGGGGGCgccGGUcgggUCGCgGCGGGCUg -3' miRNA: 3'- aGGcCCCUCGa--CCA----AGCGgCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 61276 | 0.72 | 0.347716 |
Target: 5'- cCCGGgauagcgucuuguuGGAGCggGGUcgUCGCCGC-AGCCa -3' miRNA: 3'- aGGCC--------------CCUCGa-CCA--AGCGGCGcUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 85995 | 0.72 | 0.357438 |
Target: 5'- gCCGGGGcGCUGG--CGCagggggGUGAGCCg -3' miRNA: 3'- aGGCCCCuCGACCaaGCGg-----CGCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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