miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 177 0.66 0.702985
Target:  5'- gCCGcGGGGCUGccUUC-CCGCGGGCg -3'
miRNA:   3'- aGGCcCCUCGACc-AAGcGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 1289 0.66 0.693379
Target:  5'- -gCGGGGGcGCg---UCGCCGuCGGGCUc -3'
miRNA:   3'- agGCCCCU-CGaccaAGCGGC-GCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 2264 0.74 0.245378
Target:  5'- gCCGGGGGGCgGGgcggCGCagCGCGcGGCCa -3'
miRNA:   3'- aGGCCCCUCGaCCaa--GCG--GCGC-UCGG- -5'
5137 5' -61.8 NC_001798.1 + 2471 0.69 0.48166
Target:  5'- gUCGGGGcccucggcgggccGGCgGGUcagCGCCGCGGGgCg -3'
miRNA:   3'- aGGCCCC-------------UCGaCCAa--GCGGCGCUCgG- -5'
5137 5' -61.8 NC_001798.1 + 2541 0.66 0.65554
Target:  5'- -gCGGGGGGCgcggcccccgcgggaGGggCgGCCGCGGGgCg -3'
miRNA:   3'- agGCCCCUCGa--------------CCaaG-CGGCGCUCgG- -5'
5137 5' -61.8 NC_001798.1 + 2603 0.71 0.377447
Target:  5'- cUUCGGGGGGCgcGGggCGCCGCccggcggcgcccuGGCCg -3'
miRNA:   3'- -AGGCCCCUCGa-CCaaGCGGCGc------------UCGG- -5'
5137 5' -61.8 NC_001798.1 + 3005 0.73 0.314162
Target:  5'- cCCGGGc-GCgGGggCGCgGCGGGCCg -3'
miRNA:   3'- aGGCCCcuCGaCCaaGCGgCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 3850 0.66 0.702985
Target:  5'- gCCGGGGcGGCUG--UCGCCcaGCccGCCg -3'
miRNA:   3'- aGGCCCC-UCGACcaAGCGG--CGcuCGG- -5'
5137 5' -61.8 NC_001798.1 + 3890 0.68 0.547766
Target:  5'- cCCGGGG-GCgggGGgccgGCCcCGGGCCa -3'
miRNA:   3'- aGGCCCCuCGa--CCaag-CGGcGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 4116 0.69 0.491664
Target:  5'- cCUGGGcGGGCUcggccGGggCGCCGCccccgGGGCCc -3'
miRNA:   3'- aGGCCC-CUCGA-----CCaaGCGGCG-----CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 4406 0.67 0.634051
Target:  5'- gUCGGcGGGGCgccgGGggUCGCgGCGAcaggcugGCCa -3'
miRNA:   3'- aGGCC-CCUCGa---CCa-AGCGgCGCU-------CGG- -5'
5137 5' -61.8 NC_001798.1 + 4904 0.72 0.357438
Target:  5'- aUCCGGGGccGCcGGUcgucucCGCCGCG-GCCc -3'
miRNA:   3'- -AGGCCCCu-CGaCCAa-----GCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 6373 0.73 0.300644
Target:  5'- gCCGGGGGGCcGGgggGCCGgGGGgCCg -3'
miRNA:   3'- aGGCCCCUCGaCCaagCGGCgCUC-GG- -5'
5137 5' -61.8 NC_001798.1 + 7326 0.7 0.429805
Target:  5'- cCCaGGGAGCcccgGGUUCcCCGaGAGCCc -3'
miRNA:   3'- aGGcCCCUCGa---CCAAGcGGCgCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 9170 0.69 0.491664
Target:  5'- gCCGGGGGGCagGGUcucuggcgggUCcCCGCGuGCg -3'
miRNA:   3'- aGGCCCCUCGa-CCA----------AGcGGCGCuCGg -5'
5137 5' -61.8 NC_001798.1 + 12701 0.67 0.615484
Target:  5'- cCCGGGuuGCUGGgggCGgCGgGGGCg -3'
miRNA:   3'- aGGCCCcuCGACCaa-GCgGCgCUCGg -5'
5137 5' -61.8 NC_001798.1 + 15186 0.72 0.365045
Target:  5'- gUUCGGGGGGUgggGGg--GCUgGCGAGCCg -3'
miRNA:   3'- -AGGCCCCUCGa--CCaagCGG-CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 15347 0.67 0.58627
Target:  5'- -gCGGGGGGCgaggcGGUgaggggggaaUCgGCCGUGGGCg -3'
miRNA:   3'- agGCCCCUCGa----CCA----------AG-CGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 16036 0.73 0.287581
Target:  5'- cUCUGGGGAGCaaaagcgacgcgUGGUaggUCGCUGgGGGCg -3'
miRNA:   3'- -AGGCCCCUCG------------ACCA---AGCGGCgCUCGg -5'
5137 5' -61.8 NC_001798.1 + 16229 0.66 0.683726
Target:  5'- gUgGGGGGGC-GGUgggGCCG-GGGCCc -3'
miRNA:   3'- aGgCCCCUCGaCCAag-CGGCgCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.