miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 129152 1.1 0.000814
Target:  5'- cUCCGGGGAGCUGGUUCGCCGCGAGCCc -3'
miRNA:   3'- -AGGCCCCUCGACCAAGCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 69297 0.66 0.693379
Target:  5'- -gCGGGGGGCgccgGGgaCGgucagcccucCCGCGcGCCg -3'
miRNA:   3'- agGCCCCUCGa---CCaaGC----------GGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 59800 0.66 0.693379
Target:  5'- cCCGGGccuggcccucGAGgccuucuucuuCUGGggCGCCGCGGucGCCc -3'
miRNA:   3'- aGGCCC----------CUC-----------GACCaaGCGGCGCU--CGG- -5'
5137 5' -61.8 NC_001798.1 + 43722 0.66 0.693379
Target:  5'- -gCGGGGGGCUGaa--GCacucaaaGUGGGCCa -3'
miRNA:   3'- agGCCCCUCGACcaagCGg------CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 43022 0.66 0.693379
Target:  5'- cCCGGGGggAGCgcgGGgccccgggCGCaaaugcggcgCGUGAGCCg -3'
miRNA:   3'- aGGCCCC--UCGa--CCaa------GCG----------GCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 29894 0.66 0.693379
Target:  5'- cCCGGcugcGGGUUGGgggUgGUCGCGGGCg -3'
miRNA:   3'- aGGCCc---CUCGACCa--AgCGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 114084 0.66 0.683726
Target:  5'- cCCGGGuuaCcGGUaCGCCGCG-GCCa -3'
miRNA:   3'- aGGCCCcucGaCCAaGCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 16229 0.66 0.683726
Target:  5'- gUgGGGGGGC-GGUgggGCCG-GGGCCc -3'
miRNA:   3'- aGgCCCCUCGaCCAag-CGGCgCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 91356 0.66 0.683726
Target:  5'- cCCGGGGgaAGCcGGgcCGcCCGCGGcacaaaacaucGCCg -3'
miRNA:   3'- aGGCCCC--UCGaCCaaGC-GGCGCU-----------CGG- -5'
5137 5' -61.8 NC_001798.1 + 73950 0.66 0.693379
Target:  5'- --aGGGGGGCgagUGGacgcgcgCgGCCGCGGGCUc -3'
miRNA:   3'- aggCCCCUCG---ACCaa-----G-CGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 1289 0.66 0.693379
Target:  5'- -gCGGGGGcGCg---UCGCCGuCGGGCUc -3'
miRNA:   3'- agGCCCCU-CGaccaAGCGGC-GCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 135313 0.66 0.697228
Target:  5'- cCCGGGccguGCUGGagCGCCuggugccggacgcguGCGAcGCCu -3'
miRNA:   3'- aGGCCCcu--CGACCaaGCGG---------------CGCU-CGG- -5'
5137 5' -61.8 NC_001798.1 + 154515 0.66 0.702985
Target:  5'- gCCGcGGGGCUGccUUC-CCGCGGGCg -3'
miRNA:   3'- aGGCcCCUCGACc-AAGcGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 78337 0.66 0.702985
Target:  5'- aCCGcGGAGCUGGUcCGgaCCG-GGGUCa -3'
miRNA:   3'- aGGCcCCUCGACCAaGC--GGCgCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 76928 0.66 0.702985
Target:  5'- gUCCGGGGcccccccccggaAGUcacGGcggCGCUGCGGGCg -3'
miRNA:   3'- -AGGCCCC------------UCGa--CCaa-GCGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 74410 0.66 0.702985
Target:  5'- gCCGGcGGAcCUGac-CGCCGCG-GCCc -3'
miRNA:   3'- aGGCC-CCUcGACcaaGCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 35436 0.66 0.702985
Target:  5'- -gCGGGaGGCgUGGgccgcuggCGCCGCG-GCCc -3'
miRNA:   3'- agGCCCcUCG-ACCaa------GCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 3850 0.66 0.702985
Target:  5'- gCCGGGGcGGCUG--UCGCCcaGCccGCCg -3'
miRNA:   3'- aGGCCCC-UCGACcaAGCGG--CGcuCGG- -5'
5137 5' -61.8 NC_001798.1 + 177 0.66 0.702985
Target:  5'- gCCGcGGGGCUGccUUC-CCGCGGGCg -3'
miRNA:   3'- aGGCcCCUCGACc-AAGcGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 104567 0.66 0.702027
Target:  5'- uUCaCGcGGGuGCUGGUgucucggggaacgUCGCC-CgGGGCCg -3'
miRNA:   3'- -AG-GC-CCCuCGACCA-------------AGCGGcG-CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.