miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 87756 0.66 0.79216
Target:  5'- -cGGcCCUGAgccGCGCGGCcacGUCGUCc -3'
miRNA:   3'- cuCCuGGACUac-CGCGCCGc--UAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 22388 0.66 0.789497
Target:  5'- gGGGGcggaaccccggcgaGCCgg--GGCGCGGCGG-CGUCg -3'
miRNA:   3'- -CUCC--------------UGGacuaCCGCGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 113642 0.66 0.783237
Target:  5'- -cGGcGCCgccaugugGGUGGCgGCGGCGGacugcuUUGCCg -3'
miRNA:   3'- cuCC-UGGa-------CUACCG-CGCCGCU------AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 85669 0.66 0.783237
Target:  5'- -cGGACC-GAcGGCGgGGUGcccgggCGCCa -3'
miRNA:   3'- cuCCUGGaCUaCCGCgCCGCua----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 115153 0.66 0.783237
Target:  5'- -cGGAUCUGGUGGCcauaGGCGAcagGCUg -3'
miRNA:   3'- cuCCUGGACUACCGcg--CCGCUag-CGG- -5'
5138 3' -59.2 NC_001798.1 + 94566 0.66 0.783237
Target:  5'- cGAGG-CCgccaaGGCGCGG--GUCGCCa -3'
miRNA:   3'- -CUCCuGGacua-CCGCGCCgcUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 84729 0.66 0.774185
Target:  5'- -cGGuguCCUGcguauGUGGgGCGGCGGg-GCCg -3'
miRNA:   3'- cuCCu--GGAC-----UACCgCGCCGCUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 12354 0.66 0.774185
Target:  5'- cGAGGuGgCUGugGGCGCGGUGGcuaaUCGUCg -3'
miRNA:   3'- -CUCC-UgGACuaCCGCGCCGCU----AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 26506 0.66 0.774185
Target:  5'- cGGGGACggUGcUGGcCGCGGCGggCGgCg -3'
miRNA:   3'- -CUCCUGg-ACuACC-GCGCCGCuaGCgG- -5'
5138 3' -59.2 NC_001798.1 + 55883 0.66 0.774185
Target:  5'- cGAGGACgaGggGGUacgagaaccaacGCGGCGAcgagCGCa -3'
miRNA:   3'- -CUCCUGgaCuaCCG------------CGCCGCUa---GCGg -5'
5138 3' -59.2 NC_001798.1 + 93067 0.66 0.774185
Target:  5'- cGAGGccaGCCagGGUaagccccagcggGGCGCGcGCGA-CGCCg -3'
miRNA:   3'- -CUCC---UGGa-CUA------------CCGCGC-CGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 15108 0.66 0.771445
Target:  5'- cGAGG-CC-GGUGGCGCugucgucguccucgGGgGGUuCGCCg -3'
miRNA:   3'- -CUCCuGGaCUACCGCG--------------CCgCUA-GCGG- -5'
5138 3' -59.2 NC_001798.1 + 6004 0.66 0.765012
Target:  5'- cGGaGACCggGAcGGCaGCGGCGGcaUCGCg -3'
miRNA:   3'- cUC-CUGGa-CUaCCG-CGCCGCU--AGCGg -5'
5138 3' -59.2 NC_001798.1 + 3201 0.66 0.765012
Target:  5'- --cGGCCggcgcgGAggcgGGCGCGGCGcucaggCGCCc -3'
miRNA:   3'- cucCUGGa-----CUa---CCGCGCCGCua----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 24625 0.66 0.765012
Target:  5'- cGGGAuCCUGGaGGCGCuGGCGGagGgCu -3'
miRNA:   3'- cUCCU-GGACUaCCGCG-CCGCUagCgG- -5'
5138 3' -59.2 NC_001798.1 + 68771 0.67 0.755728
Target:  5'- cGGGGCCUGcccggGUGGC-CGGUGuguGUgGCCu -3'
miRNA:   3'- cUCCUGGAC-----UACCGcGCCGC---UAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 97445 0.67 0.755728
Target:  5'- gGAGGcgcugcgccGCgUGcUGGCGCGGCuGGggGCCg -3'
miRNA:   3'- -CUCC---------UGgACuACCGCGCCG-CUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 146114 0.67 0.755728
Target:  5'- aGGGGGggUGGUGGCgGCGGCGGUgGa- -3'
miRNA:   3'- -CUCCUggACUACCG-CGCCGCUAgCgg -5'
5138 3' -59.2 NC_001798.1 + 78609 0.67 0.750106
Target:  5'- cGAGGGCCUGGccaaccucaagaccaUGcUGaaGGUGGUCGCCg -3'
miRNA:   3'- -CUCCUGGACU---------------ACcGCg-CCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 135259 0.67 0.746339
Target:  5'- -cGGGCCUGGaaaGGCuggacgcgcugGUGGCGGcCGCCc -3'
miRNA:   3'- cuCCUGGACUa--CCG-----------CGCCGCUaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.