miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 5' -58.5 NC_001798.1 + 61611 0.66 0.821312
Target:  5'- aCGGGUGUUUAcCCaaaaGUCCcuguUCCCCAu -3'
miRNA:   3'- -GCCCGCAAGUaGGc---CAGGu---AGGGGUu -5'
5138 5' -58.5 NC_001798.1 + 114336 0.66 0.821312
Target:  5'- aGGGCGUgugCAguUCgaGGUCCAccagCCCCu- -3'
miRNA:   3'- gCCCGCAa--GU--AGg-CCAGGUa---GGGGuu -5'
5138 5' -58.5 NC_001798.1 + 3023 0.66 0.821312
Target:  5'- gCGGGcCGggC-UCCGG-CCAgCCCCGg -3'
miRNA:   3'- -GCCC-GCaaGuAGGCCaGGUaGGGGUu -5'
5138 5' -58.5 NC_001798.1 + 44504 0.66 0.812796
Target:  5'- uCGGGUGgugggUCAcgCCcacuUCCGUCCCCAAu -3'
miRNA:   3'- -GCCCGCa----AGUa-GGcc--AGGUAGGGGUU- -5'
5138 5' -58.5 NC_001798.1 + 7048 0.66 0.795295
Target:  5'- cCGGG-GUUUccCCGGcCCAcCCCCAAa -3'
miRNA:   3'- -GCCCgCAAGuaGGCCaGGUaGGGGUU- -5'
5138 5' -58.5 NC_001798.1 + 40324 0.66 0.791724
Target:  5'- uCGGGCG-UCA-CCGcccccgcccccgCCGUCCCCAGa -3'
miRNA:   3'- -GCCCGCaAGUaGGCca----------GGUAGGGGUU- -5'
5138 5' -58.5 NC_001798.1 + 10476 0.67 0.739634
Target:  5'- aGGGUGUaCAgaCCGcuGUCCGUCUCCAGg -3'
miRNA:   3'- gCCCGCAaGUa-GGC--CAGGUAGGGGUU- -5'
5138 5' -58.5 NC_001798.1 + 41440 0.67 0.74919
Target:  5'- gCGGGCGUgggg--GGUCCAUgCCCCGc -3'
miRNA:   3'- -GCCCGCAaguaggCCAGGUA-GGGGUu -5'
5138 5' -58.5 NC_001798.1 + 136005 0.67 0.758646
Target:  5'- gGGGCGgggagUCGGUCggCGUCCCCGu -3'
miRNA:   3'- gCCCGCaaguaGGCCAG--GUAGGGGUu -5'
5138 5' -58.5 NC_001798.1 + 151628 0.67 0.758646
Target:  5'- gGGGCGUgg--CCGcGUCCAUCaggCCCGc -3'
miRNA:   3'- gCCCGCAaguaGGC-CAGGUAG---GGGUu -5'
5138 5' -58.5 NC_001798.1 + 115521 0.67 0.777222
Target:  5'- gGGGCGUaCGUCgCGGccccggCCggCCCCGg -3'
miRNA:   3'- gCCCGCAaGUAG-GCCa-----GGuaGGGGUu -5'
5138 5' -58.5 NC_001798.1 + 35548 0.68 0.720259
Target:  5'- gGGGCGUUg--CCGGcCCGgcccggCCCCGGa -3'
miRNA:   3'- gCCCGCAAguaGGCCaGGUa-----GGGGUU- -5'
5138 5' -58.5 NC_001798.1 + 110936 0.68 0.710457
Target:  5'- gCGGucaaacGCGgaCAUCCGGUCgaCGUCCCCc- -3'
miRNA:   3'- -GCC------CGCaaGUAGGCCAG--GUAGGGGuu -5'
5138 5' -58.5 NC_001798.1 + 4118 0.68 0.710457
Target:  5'- uGGGCGggcUCggCCGGggcgCCGcCCCCGGg -3'
miRNA:   3'- gCCCGCa--AGuaGGCCa---GGUaGGGGUU- -5'
5138 5' -58.5 NC_001798.1 + 57048 0.69 0.630434
Target:  5'- aCGGGCGgucCGUCCGGcCCcacaCCCAGu -3'
miRNA:   3'- -GCCCGCaa-GUAGGCCaGGuag-GGGUU- -5'
5138 5' -58.5 NC_001798.1 + 137332 0.7 0.600226
Target:  5'- gCGGGCGUggggUCGG-CCAUCCCUg- -3'
miRNA:   3'- -GCCCGCAaguaGGCCaGGUAGGGGuu -5'
5138 5' -58.5 NC_001798.1 + 123330 0.7 0.570222
Target:  5'- uGGuGCG-UC-UCCGGUCCcuUCCCCAc -3'
miRNA:   3'- gCC-CGCaAGuAGGCCAGGu-AGGGGUu -5'
5138 5' -58.5 NC_001798.1 + 128903 1.06 0.00282
Target:  5'- cCGGGCGUUCAUCCGGUCCAUCCCCAAc -3'
miRNA:   3'- -GCCCGCAAGUAGGCCAGGUAGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.