Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5139 | 5' | -51.5 | NC_001798.1 | + | 101034 | 0.66 | 0.989899 |
Target: 5'- gACGAGGccAAGUugGCCGAGgcCCGAGa-- -3' miRNA: 3'- -UGCUCCaaUUCA--CGGCUC--GGUUCaug -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 99625 | 0.66 | 0.988486 |
Target: 5'- -gGAGGUggacGAGaUGCucCGcGCCGAGUACg -3' miRNA: 3'- ugCUCCAa---UUC-ACG--GCuCGGUUCAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 137476 | 0.66 | 0.988486 |
Target: 5'- -gGGGGUUGGGgagggggGCCGgggcagAGCCGcGUGCu -3' miRNA: 3'- ugCUCCAAUUCa------CGGC------UCGGUuCAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 153690 | 0.66 | 0.987566 |
Target: 5'- cGCGGGGgccgccGCCGGcgcaggcucaggcgcGCCAGGUACu -3' miRNA: 3'- -UGCUCCaauucaCGGCU---------------CGGUUCAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 61028 | 0.66 | 0.986923 |
Target: 5'- -gGGGGUUAGGgggGCCGGGggacCCGAGccACa -3' miRNA: 3'- ugCUCCAAUUCa--CGGCUC----GGUUCa-UG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 53436 | 0.66 | 0.985381 |
Target: 5'- gGCGAGGUgGAGcugucgggcggccaGCUGAGCCGcgccauccuagcgcAGUACu -3' miRNA: 3'- -UGCUCCAaUUCa-------------CGGCUCGGU--------------UCAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 52340 | 0.66 | 0.985202 |
Target: 5'- cCGGGGUcguGGcgGCCGAGCaCGAG-GCg -3' miRNA: 3'- uGCUCCAau-UCa-CGGCUCG-GUUCaUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 146072 | 0.66 | 0.985202 |
Target: 5'- cACGGGGggGAGggGuCCGGGgCGAGgcggGCg -3' miRNA: 3'- -UGCUCCaaUUCa-C-GGCUCgGUUCa---UG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 146418 | 0.66 | 0.983313 |
Target: 5'- gACGGGGcga---GCCGGGCaGAGUGCg -3' miRNA: 3'- -UGCUCCaauucaCGGCUCGgUUCAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 40489 | 0.66 | 0.983313 |
Target: 5'- gACGAGccugccuGUGCUGGGCCGGGggagggGCa -3' miRNA: 3'- -UGCUCcaauu--CACGGCUCGGUUCa-----UG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 137814 | 0.66 | 0.983313 |
Target: 5'- cGCGGGGaugUAcuGGUGCUGgaaacuguuGGCCAcGUACg -3' miRNA: 3'- -UGCUCCa--AU--UCACGGC---------UCGGUuCAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 108030 | 0.67 | 0.978997 |
Target: 5'- cCGAGGUgcGGaGCCucuuuGGGCCGugGGUACg -3' miRNA: 3'- uGCUCCAauUCaCGG-----CUCGGU--UCAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 148429 | 0.67 | 0.973903 |
Target: 5'- gGCGGGGgu-GG-GCaCGGGCgUAAGUGCg -3' miRNA: 3'- -UGCUCCaauUCaCG-GCUCG-GUUCAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 99127 | 0.67 | 0.973903 |
Target: 5'- -gGGGGUc---UGCCGcuccacGGCCAAGUACg -3' miRNA: 3'- ugCUCCAauucACGGC------UCGGUUCAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 97569 | 0.68 | 0.964666 |
Target: 5'- aGCGAGGacgggGAGcgcgGCCccGAGCCAGGgGCg -3' miRNA: 3'- -UGCUCCaa---UUCa---CGG--CUCGGUUCaUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 152252 | 0.68 | 0.963631 |
Target: 5'- cCGGGGUccgcccgggagcucGUGCCGGGCCGGGg-- -3' miRNA: 3'- uGCUCCAauu-----------CACGGCUCGGUUCaug -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 61297 | 0.68 | 0.957362 |
Target: 5'- aGCGGGGUc--GUcGCCGcAGCCAcuGUACa -3' miRNA: 3'- -UGCUCCAauuCA-CGGC-UCGGUu-CAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 72671 | 0.7 | 0.912132 |
Target: 5'- cACGAGGgUAAcGUGCUG-GCCGucGUGCg -3' miRNA: 3'- -UGCUCCaAUU-CACGGCuCGGUu-CAUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 36286 | 0.71 | 0.88539 |
Target: 5'- gGCGGGGggGGGUGCCGuggguguggcGGCgGGGcGCg -3' miRNA: 3'- -UGCUCCaaUUCACGGC----------UCGgUUCaUG- -5' |
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5139 | 5' | -51.5 | NC_001798.1 | + | 53625 | 0.71 | 0.878089 |
Target: 5'- aGCGGGGcc----GCCGcGGCCAAGUACg -3' miRNA: 3'- -UGCUCCaauucaCGGC-UCGGUUCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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