Results 61 - 80 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5140 | 5' | -54.2 | NC_001798.1 | + | 20364 | 0.69 | 0.842253 |
Target: 5'- -cGGGcggguuCGGGGCGGC-ACGCAg -3' miRNA: 3'- uaCCCuaaaauGCUCCGCCGcUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 2606 | 0.69 | 0.841425 |
Target: 5'- -cGGGGggc-GCGGGGCgccgcccGGCGGCGCc -3' miRNA: 3'- uaCCCUaaaaUGCUCCG-------CCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 2506 | 0.69 | 0.833887 |
Target: 5'- -cGGGGcgcgGCGGccgcGGCGGCGGCGUc -3' miRNA: 3'- uaCCCUaaaaUGCU----CCGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 1859 | 0.69 | 0.825331 |
Target: 5'- -cGGcGUUgacgacgAUGAGGCGGCGGuCGCAg -3' miRNA: 3'- uaCCcUAAaa-----UGCUCCGCCGCU-GCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 34604 | 0.69 | 0.816591 |
Target: 5'- gGUGGGAcgcggGCaaaGGGCGGCGGCgGCGg -3' miRNA: 3'- -UACCCUaaaa-UGc--UCCGCCGCUG-CGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 86144 | 0.69 | 0.815708 |
Target: 5'- cUGGGAagcgcaccGCGGGGCGcgcaugcGCGACGCGg -3' miRNA: 3'- uACCCUaaaa----UGCUCCGC-------CGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 55891 | 0.69 | 0.849612 |
Target: 5'- -aGGGGg--UACGAGaaccaacGCGGCGACGa- -3' miRNA: 3'- uaCCCUaaaAUGCUC-------CGCCGCUGCgu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 142481 | 0.69 | 0.849612 |
Target: 5'- -cGGGAcggccccCGAGGCGGCGcgggggugcgauaACGCAc -3' miRNA: 3'- uaCCCUaaaau--GCUCCGCCGC-------------UGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 36602 | 0.69 | 0.858381 |
Target: 5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3' miRNA: 3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 36560 | 0.69 | 0.858381 |
Target: 5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3' miRNA: 3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 36518 | 0.69 | 0.858381 |
Target: 5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3' miRNA: 3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 146082 | 0.69 | 0.858381 |
Target: 5'- -aGGGGUccgggGCGAGGCGgGCGG-GCGa -3' miRNA: 3'- uaCCCUAaaa--UGCUCCGC-CGCUgCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 51160 | 0.69 | 0.856014 |
Target: 5'- -cGGGucccgACGcgcguccgaggcccGGGCGGCGGCGCc -3' miRNA: 3'- uaCCCuaaaaUGC--------------UCCGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 12256 | 0.69 | 0.85042 |
Target: 5'- cGUGGGGccgcggACGAccaGGcCGGUGGCGCAg -3' miRNA: 3'- -UACCCUaaaa--UGCU---CC-GCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 52 | 0.7 | 0.779033 |
Target: 5'- uUGGGGggggGCGcgaaggcGGGCGGCGGCgGCGg -3' miRNA: 3'- uACCCUaaaaUGC-------UCCGCCGCUG-CGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 88055 | 0.7 | 0.779033 |
Target: 5'- cUGGGGgg--GCGggcucguccccugGGGCGGCGGCGUc -3' miRNA: 3'- uACCCUaaaaUGC-------------UCCGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 154390 | 0.7 | 0.779033 |
Target: 5'- uUGGGGggggGCGcgaaggcGGGCGGCGGCgGCGg -3' miRNA: 3'- uACCCUaaaaUGC-------UCCGCCGCUG-CGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 56141 | 0.7 | 0.779979 |
Target: 5'- gGUGGGAaaa-GCGAGuGCGGCGGCu-- -3' miRNA: 3'- -UACCCUaaaaUGCUC-CGCCGCUGcgu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 34078 | 0.7 | 0.807678 |
Target: 5'- uUGGGGUUgUugGGGGgGGgugacCGGCGCGu -3' miRNA: 3'- uACCCUAAaAugCUCCgCC-----GCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 38284 | 0.7 | 0.807678 |
Target: 5'- cGUGGcAUUcagacagUACGGGGgGGCGACGUg -3' miRNA: 3'- -UACCcUAAa------AUGCUCCgCCGCUGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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