Results 81 - 96 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5140 | 5' | -54.2 | NC_001798.1 | + | 68806 | 0.71 | 0.710979 |
Target: 5'- cUGGGGUccgcUGCaGAcGGCGGUGACGCu -3' miRNA: 3'- uACCCUAaa--AUG-CU-CCGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 12605 | 0.71 | 0.760809 |
Target: 5'- uUGGGGgccaucUGAGcGCGGCGGCGUAc -3' miRNA: 3'- uACCCUaaaau-GCUC-CGCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 24319 | 0.72 | 0.701789 |
Target: 5'- -cGGGGcgcgaacccccgACGAcGGCGGCGACGCc -3' miRNA: 3'- uaCCCUaaaa--------UGCU-CCGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 150084 | 0.72 | 0.700764 |
Target: 5'- cUGGGGg---GCGAGG-GGCGAgCGCGg -3' miRNA: 3'- uACCCUaaaaUGCUCCgCCGCU-GCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 15348 | 0.72 | 0.700764 |
Target: 5'- -cGGGGg---GCGAGGCGGUGAgGgGg -3' miRNA: 3'- uaCCCUaaaaUGCUCCGCCGCUgCgU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 23879 | 0.72 | 0.69049 |
Target: 5'- cUGGGGggcgccCGAGGCGGaggaGGCGCGg -3' miRNA: 3'- uACCCUaaaau-GCUCCGCCg---CUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 71395 | 0.72 | 0.680165 |
Target: 5'- -aGGGGUUUUugGuGGCGGgGgugcccGCGCGg -3' miRNA: 3'- uaCCCUAAAAugCuCCGCCgC------UGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 28779 | 0.73 | 0.607244 |
Target: 5'- -gGaGGAggagGCGGcGGCGGCGGCGCGc -3' miRNA: 3'- uaC-CCUaaaaUGCU-CCGCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 15086 | 0.73 | 0.611413 |
Target: 5'- uUGGGGUUcggaguucggaagGCGAGGcCGGUGGCGCu -3' miRNA: 3'- uACCCUAAaa-----------UGCUCC-GCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 112494 | 0.73 | 0.61767 |
Target: 5'- gGUGGGAgcaaggGCu-GGCGGUGGCGCGa -3' miRNA: 3'- -UACCCUaaaa--UGcuCCGCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 95374 | 0.73 | 0.628106 |
Target: 5'- uUGcGGAgg--GCGGGGCGGCGGuCGCc -3' miRNA: 3'- uAC-CCUaaaaUGCUCCGCCGCU-GCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 145380 | 0.73 | 0.638546 |
Target: 5'- uUGGGAacc--CGAGG-GGCGACGCGg -3' miRNA: 3'- uACCCUaaaauGCUCCgCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 48731 | 0.73 | 0.648981 |
Target: 5'- cUGGGGUgauacuuaaaUGCGGGGUGGUGgACGCGa -3' miRNA: 3'- uACCCUAaa--------AUGCUCCGCCGC-UGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 14982 | 0.74 | 0.555558 |
Target: 5'- -cGGGAgcuuggGCGGGGgGGCGAgGCGu -3' miRNA: 3'- uaCCCUaaaa--UGCUCCgCCGCUgCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 2266 | 0.78 | 0.385262 |
Target: 5'- -cGGGGg---GCGGGGCGGCGcaGCGCGc -3' miRNA: 3'- uaCCCUaaaaUGCUCCGCCGC--UGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 128352 | 1.07 | 0.005478 |
Target: 5'- uAUGGGAUUUUACGAGGCGGCGACGCAa -3' miRNA: 3'- -UACCCUAAAAUGCUCCGCCGCUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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