miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 116331 0.67 0.919813
Target:  5'- -cGGGGgggcACGAGcccgucuacGCGGCGGCGUg -3'
miRNA:   3'- uaCCCUaaaaUGCUC---------CGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 36293 0.67 0.919813
Target:  5'- -gGGGGUgccgUGgGuguGGCGGCGGgGCGc -3'
miRNA:   3'- uaCCCUAaa--AUgCu--CCGCCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 152044 0.67 0.919813
Target:  5'- -aGGGu-----CGGGG-GGCGGCGCAc -3'
miRNA:   3'- uaCCCuaaaauGCUCCgCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 26507 0.67 0.909693
Target:  5'- -gGGGAcggugcuggccgcgGCG-GGCGGCGGCGUg -3'
miRNA:   3'- uaCCCUaaaa----------UGCuCCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 36040 0.67 0.907834
Target:  5'- -gGGGGUg--GCGGcGGUGGuCGGCGUg -3'
miRNA:   3'- uaCCCUAaaaUGCU-CCGCC-GCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 150569 0.67 0.907834
Target:  5'- -cGGGGccc-GCGGGGCGGCG-CGgAg -3'
miRNA:   3'- uaCCCUaaaaUGCUCCGCCGCuGCgU- -5'
5140 5' -54.2 NC_001798.1 + 96697 0.67 0.913947
Target:  5'- -cGGGAgUUUAUGGuGGCGGCGGUGgGg -3'
miRNA:   3'- uaCCCUaAAAUGCU-CCGCCGCUGCgU- -5'
5140 5' -54.2 NC_001798.1 + 9120 0.67 0.913947
Target:  5'- -gGGGAgccgccGCGAGGUGGUcugcggcacgcgGGCGCGg -3'
miRNA:   3'- uaCCCUaaaa--UGCUCCGCCG------------CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 8792 0.67 0.925431
Target:  5'- -cGGGAcgg-GCGAGGCcGCGGgGUAa -3'
miRNA:   3'- uaCCCUaaaaUGCUCCGcCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 146117 0.67 0.901476
Target:  5'- -gGGGGUggugGCGGcGGCGGUGGaaaGCGg -3'
miRNA:   3'- uaCCCUAaaa-UGCU-CCGCCGCUg--CGU- -5'
5140 5' -54.2 NC_001798.1 + 83867 0.66 0.949804
Target:  5'- -cGGGcc----CGAGGCGGCGACc-- -3'
miRNA:   3'- uaCCCuaaaauGCUCCGCCGCUGcgu -5'
5140 5' -54.2 NC_001798.1 + 79949 0.66 0.949804
Target:  5'- cUGGGcugg-GCGuccGGaGCGGCGGCGCc -3'
miRNA:   3'- uACCCuaaaaUGC---UC-CGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 69005 0.66 0.945421
Target:  5'- -cGGcGGcgUcGCGcgcaucguAGGCGGCGGCGCAc -3'
miRNA:   3'- uaCC-CUaaAaUGC--------UCCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 43830 0.66 0.945421
Target:  5'- -cGGucucgcgUACGucGGCGGCGAUGCGg -3'
miRNA:   3'- uaCCcuaaa--AUGCu-CCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 83967 0.66 0.944969
Target:  5'- -cGGcGAcgg-GCGAGGgccugcuCGGCGGCGCGa -3'
miRNA:   3'- uaCC-CUaaaaUGCUCC-------GCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 31367 0.66 0.940794
Target:  5'- gGUGGGcgaagACGccGCGGCGGCGgAg -3'
miRNA:   3'- -UACCCuaaaaUGCucCGCCGCUGCgU- -5'
5140 5' -54.2 NC_001798.1 + 22280 0.66 0.930801
Target:  5'- aAUGaGAUgccgcgcggGCGGagcGGCGGCGGCGCGa -3'
miRNA:   3'- -UACcCUAaaa------UGCU---CCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 74099 0.66 0.930801
Target:  5'- -gGGGAgcccacgGCGGGGCuGCuggaGACGCAa -3'
miRNA:   3'- uaCCCUaaaa---UGCUCCGcCG----CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 10280 0.66 0.930801
Target:  5'- -aGGGugcgu-CGGGGgGGCGACGgGg -3'
miRNA:   3'- uaCCCuaaaauGCUCCgCCGCUGCgU- -5'
5140 5' -54.2 NC_001798.1 + 113479 0.66 0.930275
Target:  5'- -gGGGGUUgUGCGugaucauGGGCGGCGcggcccuguGCGCc -3'
miRNA:   3'- uaCCCUAAaAUGC-------UCCGCCGC---------UGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.