miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 50396 0.68 0.894875
Target:  5'- -gGGGGUaggaugUGCGAccgGGCGGCG-CGCc -3'
miRNA:   3'- uaCCCUAaa----AUGCU---CCGCCGCuGCGu -5'
5140 5' -54.2 NC_001798.1 + 27209 0.68 0.888036
Target:  5'- -gGGGAagccccCGGGGCGG-GGCGCGg -3'
miRNA:   3'- uaCCCUaaaau-GCUCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 14320 0.68 0.888036
Target:  5'- -gGGGGUgcgugGgGAGGCGuGCGGuCGCGu -3'
miRNA:   3'- uaCCCUAaaa--UgCUCCGC-CGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 9120 0.67 0.913947
Target:  5'- -gGGGAgccgccGCGAGGUGGUcugcggcacgcgGGCGCGg -3'
miRNA:   3'- uaCCCUaaaa--UGCUCCGCCG------------CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 96697 0.67 0.913947
Target:  5'- -cGGGAgUUUAUGGuGGCGGCGGUGgGg -3'
miRNA:   3'- uaCCCUaAAAUGCU-CCGCCGCUGCgU- -5'
5140 5' -54.2 NC_001798.1 + 113479 0.66 0.930275
Target:  5'- -gGGGGUUgUGCGugaucauGGGCGGCGcggcccuguGCGCc -3'
miRNA:   3'- uaCCCUAAaAUGC-------UCCGCCGC---------UGCGu -5'
5140 5' -54.2 NC_001798.1 + 144310 0.67 0.927609
Target:  5'- -aGGGGcacggaagucgGCaGGGGCGGCGuCGCAu -3'
miRNA:   3'- uaCCCUaaaa-------UG-CUCCGCCGCuGCGU- -5'
5140 5' -54.2 NC_001798.1 + 153071 0.67 0.925431
Target:  5'- cUGGGGcgg-GCGGaGCGGCGGgGCGg -3'
miRNA:   3'- uACCCUaaaaUGCUcCGCCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 150419 0.67 0.925431
Target:  5'- -cGGGGgc------GGCGGCGGCGCGg -3'
miRNA:   3'- uaCCCUaaaaugcuCCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 64723 0.67 0.925431
Target:  5'- cUGGGc-----CGAGGCGGCGgugggcaugaGCGCGa -3'
miRNA:   3'- uACCCuaaaauGCUCCGCCGC----------UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 8792 0.67 0.925431
Target:  5'- -cGGGAcgg-GCGAGGCcGCGGgGUAa -3'
miRNA:   3'- uaCCCUaaaaUGCUCCGcCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 149928 0.67 0.919813
Target:  5'- -gGaGGAgg--AgGAGGCGGCGGCGa- -3'
miRNA:   3'- uaC-CCUaaaaUgCUCCGCCGCUGCgu -5'
5140 5' -54.2 NC_001798.1 + 116331 0.67 0.919813
Target:  5'- -cGGGGgggcACGAGcccgucuacGCGGCGGCGUg -3'
miRNA:   3'- uaCCCUaaaaUGCUC---------CGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 36293 0.67 0.919813
Target:  5'- -gGGGGUgccgUGgGuguGGCGGCGGgGCGc -3'
miRNA:   3'- uaCCCUAaa--AUgCu--CCGCCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 152044 0.67 0.919813
Target:  5'- -aGGGu-----CGGGG-GGCGGCGCAc -3'
miRNA:   3'- uaCCCuaaaauGCUCCgCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 113339 0.68 0.88664
Target:  5'- -cGGGuggaccggACG-GGCGGUGGCGCc -3'
miRNA:   3'- uaCCCuaaaa---UGCuCCGCCGCUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.