miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 128352 1.07 0.005478
Target:  5'- uAUGGGAUUUUACGAGGCGGCGACGCAa -3'
miRNA:   3'- -UACCCUAAAAUGCUCCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 2266 0.78 0.385262
Target:  5'- -cGGGGg---GCGGGGCGGCGcaGCGCGc -3'
miRNA:   3'- uaCCCUaaaaUGCUCCGCCGC--UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 14982 0.74 0.555558
Target:  5'- -cGGGAgcuuggGCGGGGgGGCGAgGCGu -3'
miRNA:   3'- uaCCCUaaaa--UGCUCCgCCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 28779 0.73 0.607244
Target:  5'- -gGaGGAggagGCGGcGGCGGCGGCGCGc -3'
miRNA:   3'- uaC-CCUaaaaUGCU-CCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 15086 0.73 0.611413
Target:  5'- uUGGGGUUcggaguucggaagGCGAGGcCGGUGGCGCu -3'
miRNA:   3'- uACCCUAAaa-----------UGCUCC-GCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 112494 0.73 0.61767
Target:  5'- gGUGGGAgcaaggGCu-GGCGGUGGCGCGa -3'
miRNA:   3'- -UACCCUaaaa--UGcuCCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 95374 0.73 0.628106
Target:  5'- uUGcGGAgg--GCGGGGCGGCGGuCGCc -3'
miRNA:   3'- uAC-CCUaaaaUGCUCCGCCGCU-GCGu -5'
5140 5' -54.2 NC_001798.1 + 145380 0.73 0.638546
Target:  5'- uUGGGAacc--CGAGG-GGCGACGCGg -3'
miRNA:   3'- uACCCUaaaauGCUCCgCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 48731 0.73 0.648981
Target:  5'- cUGGGGUgauacuuaaaUGCGGGGUGGUGgACGCGa -3'
miRNA:   3'- uACCCUAaa--------AUGCUCCGCCGC-UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 71395 0.72 0.680165
Target:  5'- -aGGGGUUUUugGuGGCGGgGgugcccGCGCGg -3'
miRNA:   3'- uaCCCUAAAAugCuCCGCCgC------UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 23879 0.72 0.69049
Target:  5'- cUGGGGggcgccCGAGGCGGaggaGGCGCGg -3'
miRNA:   3'- uACCCUaaaau-GCUCCGCCg---CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 150084 0.72 0.700764
Target:  5'- cUGGGGg---GCGAGG-GGCGAgCGCGg -3'
miRNA:   3'- uACCCUaaaaUGCUCCgCCGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 15348 0.72 0.700764
Target:  5'- -cGGGGg---GCGAGGCGGUGAgGgGg -3'
miRNA:   3'- uaCCCUaaaaUGCUCCGCCGCUgCgU- -5'
5140 5' -54.2 NC_001798.1 + 24319 0.72 0.701789
Target:  5'- -cGGGGcgcgaacccccgACGAcGGCGGCGACGCc -3'
miRNA:   3'- uaCCCUaaaa--------UGCU-CCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 68806 0.71 0.710979
Target:  5'- cUGGGGUccgcUGCaGAcGGCGGUGACGCu -3'
miRNA:   3'- uACCCUAaa--AUG-CU-CCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 12605 0.71 0.760809
Target:  5'- uUGGGGgccaucUGAGcGCGGCGGCGUAc -3'
miRNA:   3'- uACCCUaaaau-GCUC-CGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 52 0.7 0.779033
Target:  5'- uUGGGGggggGCGcgaaggcGGGCGGCGGCgGCGg -3'
miRNA:   3'- uACCCUaaaaUGC-------UCCGCCGCUG-CGU- -5'
5140 5' -54.2 NC_001798.1 + 88055 0.7 0.779033
Target:  5'- cUGGGGgg--GCGggcucguccccugGGGCGGCGGCGUc -3'
miRNA:   3'- uACCCUaaaaUGC-------------UCCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 154390 0.7 0.779033
Target:  5'- uUGGGGggggGCGcgaaggcGGGCGGCGGCgGCGg -3'
miRNA:   3'- uACCCUaaaaUGC-------UCCGCCGCUG-CGU- -5'
5140 5' -54.2 NC_001798.1 + 56141 0.7 0.779979
Target:  5'- gGUGGGAaaa-GCGAGuGCGGCGGCu-- -3'
miRNA:   3'- -UACCCUaaaaUGCUC-CGCCGCUGcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.